Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1965 ATGGGAGGAAATTCAGCTGAGAGAAAACCTGGTTGTGGCCTGATAACAGCAGTATTCGGTCGACACAGACATAATCCAAGTTCACGCAGATCAGTCTCTGCAGGTTCTTCTCCTGTGGCCAACAATTTCGGAAAACCATCAAACATTCTATACACAAAACGGGGACATGGAGGCTCTAATGATGTTGTTGTTTCAATTCGACAATCTTCATTTAATGAAGCTACAAACTACTCATCACCTTGTTCTGTCTCCAATTCTCAAAAGCAGCCAATCCATGTTGTAAGCCAAAGGAAACCACAGAATCAAAAGGAAACAATGGGAAAAGGTCTCCCAACCACGCAGGGTTATGTAAACCAAGGAAAAAGGGTTCCAAAAGAAGCTGTTGGAATCTCCGGCGAACTCGAAAGCATGATCGATGATCACCTACAATCCAAGGGAAGTAGTAACCTTGTTCGCGCTTCTTCCAGCAATGTGATGTTGTTTGGTAATTTAGGTAACCTTAGACAAGGAGGAGCTGGACCAAACCACAGTGAAATGGATTGCTATGTTAATAATGTTGCTAGTGAATGTGATAATGGTAGATATAGCAAAGAAACTAAACCAAACAGGGAACAATCAAGTTCACTATGTAGGGCTGTTTCTACTAGAATGGATCCTGAACAATTAAAGATAATGGGCAATGAGGATTACAAGAATGGAAGGTTTGCAGAGGCCTTGGCTTTGTATGATGCTGCCATTGCAATTGACCCTAATAAGGCTTCTTATAGAAGCAATAGAAGTGCTGCATTAACTGCTCTCGGTAGGCTTTTGGAGGCTGTTTTTGAATGTAGAGAAGCTATTCGAATTGAGTCTCATTACCAAAGAGCCCACCATCGGTTGGGAAATTTGCACTTAAGATTAGGAGAAACAGATAAAGCTTTGTACCATTATAAACAAGCAGGACCAGAGGCTGATCCAGATGAGATTGCTAAAGCAAAGACTCTCCAAGTATATCTAAACAAATGCACCGAGGCTCGTAGGTTGGGGAATTGGAACGCACTTATAACTGAAACCAACAAAGCTATATCATCCGGTGCAGACTCTGCTCCACAAATACATGCATTACAAGCCGAAGCCTTGCTAAAGCTTCGAAGACATCAAGATGCAGACAGAGTAATGTTGAAGTGCCCTAAGTTTGATGTTGATCAATGTACTAAGTTCTTTGGACCTATTGGTAGTGCAAATTTGTTGGTAACACGGGCTCGAGTTGATTTAGTTGCTGGCAGATTTGAAGATGCATTGGAGGCAGCACAGAAAGCAACAAGGTTGGATTCTAACAGTGAAGAGGCAAAAAAGGTGATGAGAAAGGCTCGAGCTATCACAAGTGCTCGTGCAAAGGGAAATGAGCTTTTCAAGGCATCAAAGTTTAACGAGGCTTGCATAGCCTATGGAGAAGGCCTTGATCATGATTCGTATAACTCTGTTTTACTATGCAACAGAGCTGCTTGTAGATCAAAACTAGGCCAATTTGAGAAAGCAATAGATGATTGCACTATTGCCCTTAACTTACGCCCATTTTACAGCAAGGCCAGGTTGAGAAGAGCAGATTGTAATGCTAAGTTGGAAAGATGGGAAGCTTCAATACAAGATTATGAAATTTTACTAAGAGAGACACCAGAAGATGAGGAAGTAAAGCGAGCATTGTTGGAGGCCCAAGCACAACTTTAA 1707 0.4171 MGGNSAERKPGCGLITAVFGRHRHNPSSRRSVSAGSSPVANNFGKPSNILYTKRGHGGSNDVVVSIRQSSFNEATNYSSPCSVSNSQKQPIHVVSQRKPQNQKETMGKGLPTTQGYVNQGKRVPKEAVGISGELESMIDDHLQSKGSSNLVRASSSNVMLFGNLGNLRQGGAGPNHSEMDCYVNNVASECDNGRYSKETKPNREQSSSLCRAVSTRMDPEQLKIMGNEDYKNGRFAEALALYDAAIAIDPNKASYRSNRSAALTALGRLLEAVFECREAIRIESHYQRAHHRLGNLHLRLGETDKALYHYKQAGPEADPDEIAKAKTLQVYLNKCTEARRLGNWNALITETNKAISSGADSAPQIHALQAEALLKLRRHQDADRVMLKCPKFDVDQCTKFFGPIGSANLLVTRARVDLVAGRFEDALEAAQKATRLDSNSEEAKKVMRKARAITSARAKGNELFKASKFNEACIAYGEGLDHDSYNSVLLCNRAACRSKLGQFEKAIDDCTIALNLRPFYSKARLRRADCNAKLERWEASIQDYEILLRETPEDEEVKRALLEAQAQL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1965 568 Pfam Tetratricopeptide repeat 289 319 IPR019734 GO:0005515
Aed7g1965 568 Pfam TPR repeat 226 267 - -
Aed7g1965 568 SMART tpr_5 521 554 IPR019734 GO:0005515
Aed7g1965 568 SMART tpr_5 219 252 IPR019734 GO:0005515
Aed7g1965 568 SMART tpr_5 253 286 IPR019734 GO:0005515
Aed7g1965 568 SMART tpr_5 287 320 IPR019734 GO:0005515
Aed7g1965 568 SMART tpr_5 407 440 IPR019734 GO:0005515
Aed7g1965 568 SMART tpr_5 453 486 IPR019734 GO:0005515
Aed7g1965 568 SMART tpr_5 487 520 IPR019734 GO:0005515
Aed7g1965 568 MobiDBLite consensus disorder prediction 21 40 - -
Aed7g1965 568 SUPERFAMILY TPR-like 219 442 IPR011990 GO:0005515
Aed7g1965 568 SUPERFAMILY TPR-like 457 566 IPR011990 GO:0005515
Aed7g1965 568 MobiDBLite consensus disorder prediction 94 117 - -
Aed7g1965 568 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 5 568 IPR044534 -
Aed7g1965 568 Pfam Tetratricopeptide repeat 499 554 - -
Aed7g1965 568 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Aed7g1965 568 Gene3D Tetratricopeptide repeat domain 217 568 IPR011990 GO:0005515
Aed7g1965 568 Coils Coil 527 547 - -
Aed7g1965 568 PANTHER OS01G0616333 PROTEIN 5 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1965 Aed-Chr7 22597584 22600441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1965 220 294 U-box Gene Family AT3G07370 34.667 5.71e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1965 - - gmx:100811282 860.136