Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1956 ATGTCCAATTCTAACTCCAATCCAAACGCAGATTCGACCCGAATACTCCACTATCAAGATCCGAATGCCACCGCGGACCCTCAGGTTCCGCTTCGAAACCTATCCCAGGTTCGGACGAGAATGGATTCTCTACAACACTTCCTATCTCAATCCATCAACACCAACACTCCCCTCACTGTCGATCAAATCGCCATGGTCTCCAGCCAAATCGTCTCCTCCATCCACCAAATCATCGTCAACGGCACTGCCCTAGTCTCTTACTCTCAAAATTCCACCACCACCACCGCCACACCGGATCCACTCTCGTATCCGAAGAAGCCCAAGCCGGAACCCTCAGCCGTCGATAAAGCGAAGAAAATACTGGATTCGAAACTCGAGCCTCCCGAAGACGACGACGGCGTCGAAGACTTTGACGACGACAGCGAAATCGTGGAGCTCGACGCCGTGGAAATCCTCGCCGAGCACATGCACTTCTGCGAGATCTGCGGGAAAGGCTTCCGCCGCGACGCAAACCTCCGCATGCACATGCGCGCGCACGGTGACCAGTTCAAGACGCCGGAGGCGCTGGCGAAGCCTTCAGAAACCACCACGCGCCGCTGCGCGACGCGGTTCTCGTGTCCGTTCGAAGGCTGCAACCGGAACAAGCTCCACCCGCGGTTCCGGCCTCTGAAATCGGTGATTTGCGTGAAGAACCACTTCAAGCGGAGCCACTGCCCGAAGATGTACACGTGCCACCGGTGCCGCAAGAAGCACTTCTCGGTGCTCTCGGATTTGAGGAGCCACGCGAAGCACTGCGGAGGAGAGGCCAGGTGGAAGTGCACGTGCGGGACCACGTTCTCGAGGAAGGACAAGTTGTTTGGTCACATTGCGCTGTTTGAGGGTCACGCGCCTGCGCTAGCGTGTGACGAAGAGGGTAAAGGAAAACAAGTGGTGGAGTATGCTGACGAAGATCCAATGTTGATGAATGAAAGTGGATTTGAATTGGATAATTGCTTTTTGGATGAAGAGTTGCCGGAAGGGTTCTTTGATGATTTTGGGTCCATTGATGACTACTGTTTAAGGGAAGGGTTAGGGTTTCCTGGTAATTGA 1089 0.5455 MSNSNSNPNADSTRILHYQDPNATADPQVPLRNLSQVRTRMDSLQHFLSQSINTNTPLTVDQIAMVSSQIVSSIHQIIVNGTALVSYSQNSTTTTATPDPLSYPKKPKPEPSAVDKAKKILDSKLEPPEDDDGVEDFDDDSEIVELDAVEILAEHMHFCEICGKGFRRDANLRMHMRAHGDQFKTPEALAKPSETTTRRCATRFSCPFEGCNRNKLHPRFRPLKSVICVKNHFKRSHCPKMYTCHRCRKKHFSVLSDLRSHAKHCGGEARWKCTCGTTFSRKDKLFGHIALFEGHAPALACDEEGKGKQVVEYADEDPMLMNESGFELDNCFLDEELPEGFFDDFGSIDDYCLREGLGFPGN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1956 362 SUPERFAMILY beta-beta-alpha zinc fingers 154 180 IPR036236 -
Aed7g1956 362 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Aed7g1956 362 MobiDBLite consensus disorder prediction 90 137 - -
Aed7g1956 362 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 18 357 - -
Aed7g1956 362 MobiDBLite consensus disorder prediction 109 127 - -
Aed7g1956 362 SMART c2h2final6 242 264 IPR013087 -
Aed7g1956 362 SMART c2h2final6 157 179 IPR013087 -
Aed7g1956 362 SMART c2h2final6 204 237 IPR013087 -
Aed7g1956 362 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 18 357 IPR044300 GO:0010044|GO:0010447
Aed7g1956 362 Gene3D Classic Zinc Finger 157 180 - -
Aed7g1956 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 184 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1956 Aed-Chr7 22509373 22510461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1956 129 303 C2H2 Transcription Factor Family AT1G34370 57.923 5.57e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed7g1956 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1956 - - gmx:100809135 608.216