Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1953 ATGGATTTGGCATCTCTTGTTCTTTTGCTATTAACTAGCTTATGCTCTTCTGCTCTGGCTGAGCTTGATGCACAAGAAGATGCACTGTATGCATTGAAGGTATCATTGAATGCTTCTCCCAACCAGCTTACAAATTGGAACAAAAATCTAGTAAACCCTTGTACATGGTCCAATGTTGAATGTGACCAGAATAACAAAGTTGTTCGAATTTCACTAGAATTTATGGGATTCACAGGATCGTTGTCACCAAGAATAGGATCTCTCAAAAGTCTTACAATTCTTTCTTTGCAAGGGAATAACATCACTGGTCACATACCAAAAGAATTTGGAAATCTTACAAGCTTGGTCAGATTGGATTTGGAAAATAACAAATTAACTGGTGAAATACCATATTCCCTTGGTAATCTTAAAAAGCTTCAATTCTTGACATTGAGTCAAAACAATCTCAATGGGACTATTCCAGAATCACTTGCCAGTCTCCCAAGCTTGATCAATGTTATGCTAGATTCAAATGATCTTTGCGGGCAGATTCCAGAGCAGTTATTCAGCGTTCCTATGTACAATTTCACTGGAAATAATTTAAATTGTGGTGTGAATTATCATCATCTTTGCACATCTGATAATGCAGATCAAGGTTCGTCACATAAAACAAAAATAGGTCTCATAGTTGGAACAGTTGCAGGTTTAGTTGTTGTTCTTTTTCTTGGTGGCCTGCTGTTCTTCTGGTACAAGAGGTGCAAGCATGAAGTTTTTGTAGATGTTCCAGCTGTCCATAGGAACCTGTTACGCCTCATTGGTTTTTGTACTACTCCAACTGAACGCCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTATCGTCTACGAGGAACTGCCCGTGGCCTAGCATATCTTCACGAGCAATGCAATCCTAGGATTATTCACAGGGATGTGAAGGCAGCTAATATATTACTAGATGGAGATTTTGAAGCAGTTGTTGGTGATTTTGGTTTGGCAAAATTAGTTGATATTCGACTTACTAATGTGACAACTCAAGTTCGTGGGACAATGGGTCATATAGCTCCAGAATACTTGTCCACTGGAAAATCTTCACAGAGGACAGATATTTTTGGTTATGGGATTATGCTTTTGGAGCTTGTTACCGGCCAACGAGCAATTGACTTTTCTCGTCTGGAAGAGGAAGACGATGTCTTATTGCTTGACCATGTTAAGAAATTGCAACGGGAGAAGAGACTAGATACTATTGTTGACAGCAACCTTAATAAAAACTACAACATAGAAGATGTTGAAGTGATTGTACAAATAGCATTACTCTGCACACAAGCATCACCGGAGGATCGTCCAGCAATGTCAGAAGTTATAAGAATGCTAGAGGGAGAAGGGCTAGCTGAAAGATGGGAGGAATGGCAGCATGTGGAGGTCAATACAAGGCAAGATTATGAGAGACTGCAAAGAAGAATGACATGGGGAGAAGATTCAGTTTATAACCAAGATGCAGTTGAGTTATCGGGTGGAAGATGA 1527 0.3955 MDLASLVLLLLTSLCSSALAELDAQEDALYALKVSLNASPNQLTNWNKNLVNPCTWSNVECDQNNKVVRISLEFMGFTGSLSPRIGSLKSLTILSLQGNNITGHIPKEFGNLTSLVRLDLENNKLTGEIPYSLGNLKKLQFLTLSQNNLNGTIPESLASLPSLINVMLDSNDLCGQIPEQLFSVPMYNFTGNNLNCGVNYHHLCTSDNADQGSSHKTKIGLIVGTVAGLVVVLFLGGLLFFWYKRCKHEVFVDVPAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRGTARGLAYLHEQCNPRIIHRDVKAANILLDGDFEAVVGDFGLAKLVDIRLTNVTTQVRGTMGHIAPEYLSTGKSSQRTDIFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLQREKRLDTIVDSNLNKNYNIEDVEVIVQIALLCTQASPEDRPAMSEVIRMLEGEGLAERWEEWQHVEVNTRQDYERLQRRMTWGEDSVYNQDAVELSGGR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1953 508 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Aed7g1953 508 CDD TM_EGFR-like 218 248 - -
Aed7g1953 508 SUPERFAMILY Protein kinase-like (PK-like) 244 460 IPR011009 -
Aed7g1953 508 SMART LRR_typ_2 160 184 IPR003591 -
Aed7g1953 508 SMART LRR_typ_2 112 135 IPR003591 -
Aed7g1953 508 SMART LRR_typ_2 136 159 IPR003591 -
Aed7g1953 508 SMART LRR_typ_2 88 111 IPR003591 -
Aed7g1953 508 SUPERFAMILY L domain-like 25 195 - -
Aed7g1953 508 Pfam Leucine rich repeat 87 125 IPR001611 GO:0005515
Aed7g1953 508 Gene3D Ribonuclease Inhibitor 22 205 IPR032675 -
Aed7g1953 508 ProSiteProfiles Protein kinase domain profile. 91 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed7g1953 508 Gene3D Transferase(Phosphotransferase) domain 1 281 479 - -
Aed7g1953 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Aed7g1953 508 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 255 - -
Aed7g1953 508 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 256 508 - -
Aed7g1953 508 Pfam Protein kinase domain 258 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed7g1953 508 PANTHER LRR RECEPTOR-LIKE KINASE 3 255 - -
Aed7g1953 508 PANTHER LRR RECEPTOR-LIKE KINASE 256 508 - -
Aed7g1953 508 Gene3D Phosphorylase Kinase; domain 1 242 280 - -
Aed7g1953 508 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 353 464 - -
Aed7g1953 508 SMART serkin_6 217 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1953 Aed-Chr7 22490640 22496565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1953 6 503 Receptor kinase-like Gene Family AT5G65240 49.346 6.20e-174 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Aed7g1953 Pkinase 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1953 - - vvi:100267381 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1953 7 22490640 22496565 Aed5g1586 5 20114422 20122660 PCT