Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1938 ATGAAGAGACTTAGCTGCAACTCAGATTCTTCCACTGCCCTCATCACAATTTGTCCATCAACAGAGGAACACAGTCCGAGGAACAGCCAGCAGCAGATGTATGGTAGCAGGGAGTTCCAATCGATGATGCTGGACGGACTCGACGAGGAAGGGTGCATCGAAGAAGCGGGGCATCAATCTGAGAAGAAGCGTCGACTGAGTGTAAATCAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTGAAGCTTGCCCAAGAACTTGGCTTGCAACCTAGACAAGTAGCCGTTTGGTTCCAGAACCGTCGAGCCAGATGGAAAACCAAACAATTGGAGAGAGATTACGGTGTCCTCAAAGTCAAATTTGATGCTCTTAAGCTTAACTTCGACACCCTCAACCAGGACAACGAAGCCTTACGAAACCAGATAAAGGAATTGAAAGAGAAGACCGTTTCAGTGAAGGAAGAGATAACGATGCCGGCAGAGTCGGAAGAAGAGAAAACGAGATTGGAATTACAAAATAGTAAGAGTGACCCGATATCTTCGGAAACCTCGAATATTCTTCCAAGTTCGGAGGTGTCCGAGGAGGAACACTTGAACTATGAGTGTTTCAACAACAACAGCGACAGTGTCGTGGGAGCCGCATCGATCTTGCAAATGGACTTCTTCAAAGACGGTTCATCCGACAGCAGCGACTCGAGCGCGATCTTGAACGAAGACAACAATATTAACAGCCCCGAAGCTCTCTTGCTGTCTCCCTTGAAATTCAATTGCTCCATCTCAACGACGACGTTGTCTTCGACGATGAACTGTTTCCAGTTCCAGAAACAACAACCGTATCATAATCACGCGGCGCAGTACGTGAAGATGGAGGAGCACAATTTCTTGAGCGCGGATGAGGCCTGCAACTTCTTCTCCGATGAACAAGCACCGACCCTGCAGTGGTACTGTCCAGACCAGTGGAACTGA 993 0.4794 MKRLSCNSDSSTALITICPSTEEHSPRNSQQQMYGSREFQSMMLDGLDEEGCIEEAGHQSEKKRRLSVNQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKVKFDALKLNFDTLNQDNEALRNQIKELKEKTVSVKEEITMPAESEEEKTRLELQNSKSDPISSETSNILPSSEVSEEEHLNYECFNNNSDSVVGAASILQMDFFKDGSSDSSDSSAILNEDNNINSPEALLLSPLKFNCSISTTTLSSTMNCFQFQKQQPYHNHAAQYVKMEEHNFLSADEACNFFSDEQAPTLQWYCPDQWN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1938 330 Gene3D - 56 124 - -
Aed7g1938 330 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Aed7g1938 330 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Aed7g1938 330 MobiDBLite consensus disorder prediction 166 181 - -
Aed7g1938 330 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Aed7g1938 330 SUPERFAMILY Homeodomain-like 43 119 IPR009057 -
Aed7g1938 330 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 322 - -
Aed7g1938 330 Coils Coil 130 164 - -
Aed7g1938 330 CDD homeodomain 62 118 IPR001356 GO:0003677
Aed7g1938 330 Pfam Homeobox associated leucine zipper 117 157 IPR003106 GO:0006355|GO:0043565
Aed7g1938 330 MobiDBLite consensus disorder prediction 166 197 - -
Aed7g1938 330 MobiDBLite consensus disorder prediction 182 197 - -
Aed7g1938 330 SMART HOX_1 60 121 IPR001356 GO:0003677
Aed7g1938 330 Pfam Homeodomain 62 115 IPR001356 GO:0003677
Aed7g1938 330 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Aed7g1938 330 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 322 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1938 Aed-Chr7 22386337 22389455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1938 1 330 Homeobox Transcription Factor Family AT2G22430 47.941 4.45e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed7g1938 Homeodomain 5.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1938 K09338 - gmx:100777924 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1964 5 22541081 22544117 Aed7g1938 7 22386337 22389455 PCT