Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1936 ATGAAGAAAGCCTCGCACCCTAATCCCAACCCCTACGCCACTCCTCGCCGCGATTTCCACCGTCCTCCACCTCCCCACGGCGGCGTTTCGAGTCCCCGCCCCGTCCTCCACCGTCCTTACAGCCATTGGAAGCCACGATTTCACCCGCACGCCGCCCGCAACGACCGCCCTCCGGAGCCTTATTTCAGGGTGGAGCTCCGCCTGGGAAGCCGCCCCCTCCGCCGCGACGACGTGGAGACTCTGATCGACGGATGCCGGTTCAGGCACGAGAACTTCACCTTCTACCCCGTGGACGACGTCGCCGCCGTGCTCAGTTACCGGAGCTGGGAGCAGGCGCGCGACTCCGTCGTTTGGTTCTGGAAGTCGCGCCTCGCGGAGAAGCACGATTTCACGCCGGCGCTGGATTCCAACGTCGTCGTCGTGAAGGACGACGTGGATTCTCGCCTTCGGCCGGTGTTCGCGAGGCACGTGAAGGGGTTGATGGAAGGGAAGGAGGTGAAGCGGTGGTTGGAGGAGAGTGATCGGTTTTCGAAGGAGATTTCTCGGGTTTCGAGTTTGCTGAGTAACCCATTGCGAATTGGCGCGCACAACCAACTCGTGGAGAAGAAGAAAGGGCTCGTTAGTGAGAAGAACCTGGTTGAGAGGAGGTTGAAGGAGTTTCAGTCTGCAATGGAGTGTATGTTGAAGTATTTGGAGGATGGTGATGGCGTGGAGGGTGTGAATGTTTTTAGGTTTGATGGAGCTTTTGATTGGAAGCGGATTCACTGTATGATCAAAAGGGAGTGTCGGAGACTTGAGGATGGGTTGCCTATTTATGCTTACCGGAGGGATATTCTTCAGGAAATACATTATCAGCAGATAATGGTATTAATCGGAGAGACTGGTTCTGGGAAGAGTACGCAGTTGGTACAGTTTCTTGCTGATTCCGGCATCGGTACTGACGAATCCATTGTATGCACCCAACCTCGCAAGATTGCTGCCAAATCAGTGGCTCAAAGGGTCCAGGATGAAAGCAGTGGATGTTATGAAGGCCAATCAATCAAATGTTGTTCTACATTTTCATCCTCGCACGAGTTTGATTCCAGGATAACATTCATGACAGATCACTGCTTATTGCAGCACTACATGAGTGATAAGAATTTGTCCGGGGTCTCGTGCATCATAATTGATGAGGCTCATGAGAGGAGCTTAAATACAGATTTACTGTTGACTTTGTTAAAGAGTTTACTTTGTAGGAGGTTTGAAATGCGACTTATCATTATGTCTGCTACAGCTGATGCAAAGCAGCTGTCTGATTACTTTTTTGCTTGTGGAATTTTCCGTGTGCTAGGGAGAAGCTTTCCAGTGGATATCAAATATGTTCCTTCTGACTATGACAGACATTCTGGTTCTGCTGTTGTTGCCTCTTATGTTTCTGATGTTGTCAGAATGGCAACTGAGATTCACAAAACTGAGAAAGAGGGAACTATTCTTGCCTTTTTGACCTCTCAGATAGAAGTAGAATGGGCCTGTGAAAAGTTTCAAGCTCCCTCTGCAGTTGCTTTGCCCTTGCATGGGAAACTATCATCTGATGAGCAATTCCGTGTTTTTCAGAGCTACCCTGAAAAGAGAAAAGTGATATTTTCAACAAATCTTGCAGAGACATCACTTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGGCTGGTTAAAGGCAGCAGATTTGATCCTGGCAGTGGCATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGAACTGAGCCTGGTGTGTGCTATAGACTGTACTCGGAACCTGATTATCAGTCTATGGACCTTAATCAAGAGCCGGAGATTCGTAGAGTTCATCTCGGTGTAGCAGTTTTGAGAATCCTTGCTTTAGGAGTGAGGAATGTGGAAGATTTTGATTTTGTCGATGCTCCAAGTCCCAGCTCTATTGATATGGCAATCAGGAATCTAATTCAATTAGGTGCCATTGAACTGAACAATAATGTTCATGATTTAACTCCTGAAGGTTGGTGCTTGGTAAAAATGGGAATTGAACCTAGGCTTGGTAAACTTATTCTTGGTTGTTTCAAACATGGTTTGGGTAGGGAAGGTATCATCCTTGCTGCTGTGATGGCCAATGCTAGTAACATCTTTTGCAGAGTGGGCAGTGAATTTGATAAACAAAGATCTGATTGTCTTAAAGTGCAGTTTTGCCATTGTGATGGGGACCTCTTTACCCTTCTCTCTGTGTACAAGGAATGGGAAGCTTTGCCTCGAGAGAGGAAGAACAAATGGTGTTGGGAAAACAGCATCAATGGAAAATCCATGAGGAGGTGCCAAGACACAATTTTGGAGTTAGAAACTTGCCTTGAGCGTGAACATAATCTTGTTACACCGAGTTACTGGCGGTGGGACCCATGTATGCCCTCTAATCATGATAAGAATTTGAAAAGGGTAATACTGTCCTCACTTGCTGAGAATGTAGCCATGTACTCTGGTAGCAACCAACTTGGTTATGAAGTGGCACAAACTGGGCAACATGTTCAACTACATCCATCTTGTTCATTGCTTGTATTTGCTCAGAAACCGAGCTGGGTAGTTTTTGGTGAGCTTCTTTCCATTTCTAATCAATATTTGGTATGTGTTAGTGCATTTGACTTTCAATCATTATACAACCTTTGCCCTGCTCCCCTGTTTGATGTATCCAAAATGGAAAAGCGGAGGTTGCAAATGAAGACACTGTCTGGTCTTGGCTGTATTCTTCTCAAGAGATTTTGTGGAAAAGCCAACAGCAACTTGCTTGGTCTTGTTTCACGTATAAGGAAAGCTTGTATGGACGAACGCATCTGTGTTGAGGTGAATGTTGACCAGAATGAAATCCACTTATTTGCCACTTCAAATGATATGGATATAGCCCTTGGGTTGGTTAATGGTGTTCTAGAACACGAGAGAAAGTGGTTAAGCAATGAATGTATTGATAAGTGTTTGTATCATGGGTCTGGTTTCTCTCCACCTGTAGCTTTGTTTGGGTCTGGTGCTGAGATAAAACATTTGGAACTTGAGAAACGTTCCTTGAGTGTTGATGTGTATCATCCAAACTTAAATGCAATTGATGACAAGGAGCTCTTAATGTTTTTTGAGAAGAATACTTCTGGTTGCATCTGTGCTGTGCACAAATTCACAGGCAATATGAGGGATGAAGATAGGGAAAAGTGGGGCAGGATAACATTTATGTCCCCTGATGATGTCAGAAGAGCTGCTGAGCTAGATGGGCAGGAGTTTTGTGGCTCATCCTTGAAAATTGTTCCTTCACAGTTGGGAGGGGATAAAACATTTCCATTCCCGGCTGTTAAAGCAAAAATTTCTTGGCCCCGTAGGCTTAGCAAGGGATTTGCCATAGTTAAATGTGATATAATGGATGTCAATTATATCTTGAGAGATTTCTACAACCTTGCAGTAGGAGGAAGGTATGTTCGATGTGAAGTTGGCAAAAAGAGTATGGACAGCGTTGTTATAAATGGGCTTGACAAAGAGCTTTCGGAAGCTGAAATATTGGATGTTTTAAGAACTGCTACAAGTAGAAGGATTTTGGATTTTTTCTTGGTGAGGGGGGATGCTGTAGGAAATCCACCATACAGTGCTTTGGAAGAGGCACTCCTAAAAGAAATTTACCCCTTTTTGCCCAAAAGGAACCCTCACATTAATCCTTGTCGAGTTCAGGTGTTTGAACCTCAGCCTAAGGATGCTTTCATGAGAGCTTTGATCACTTTTGATGGAAGATTACATTTAGAGGCAGCAAAAGCTTTGGAGCAAATTGAAGGAAAGGTGTTACCTGGATGTCTTTCATGGCAAAAGATAAAGTGCCAGCAGTTATTTCATAGCTCCCTTACATTTCCTATTCCAGTGTATCGTGTGATTAAGGAACAACTGGATAAAGTACTTGCAAGCTTCAGGAATTTTAAAGGTCTTGAATGCAACCTGGACAGGACCTTGAATGGTTCTCACCGAGTGAAGATAACAGCGAATGCCACAAGGACAGTGGCGGAAGTTAGAAAACTTCTGGAAGAACTATCAAGAGGGAAAACCATTGAGCATGACAGCCTCACCCCTGCAGTTCTCCAGCTCATGTTGTCCAGGGACGGCTTTAGTCTTAAAAACTCGTTGGAGCAAGAGACTGGAACTTATATTATTTTTGACAGGCACAACTTGAATTTACGGGTGTTTGGTTCCCCAAACAATGTTGCTTTGGCTCAGGATAAGGTGATTCAGTCCCTCCTTTCTCTCCATGAAGAAAAGCAGTTAGAAATCCATCTGAGAGGAGGGGATCTACCTCCTGATTTAATGAAGCAATTGATTAAGAATTTTGGGCCAGATCTCCGTGGACTGAAAGAGAGGGTACCTGGGGTAGATCTTACACTCAACATACGTCGCCATGTAATCATTCTTCACGGTAGCAAGGAGTTGAAACCCAGAGTAGAGGAATTAATTTTTGAGATTGCTCGTTCAAGCCATCATCAGGTTAACAATGGACCTAGTTGCCCAATTTGCTTGTGTGAGGTTGAGGATGGATACCGGCTTGAAGGCTGTGGTCATTTGTTCTGCCGGATGTGTCTGGTTGAGCAATTTGAATCTGCAATTAAAAACAAAGGCACTTTCCCAGTATGCTGTGCTCACATGGACCACAAAGATCCCCCCCCCCCCATCCCCTTCCCCATCCTGCTTACAGATTTGAGATCTCTTTTATTTGGTGATAAGTTGGAGGATCTTTTCAGGGCTTCTTTGGAAGCTTTTGTGACAAAAAGTTTGAAAACTTACAGGTTTTGCCCTTCACCTGACTGCCCCTCAATTTATCGAACGGCAGATCCTGGGTCTGCTGGTGAGCCATTTGTTTGTGGGGCTTGTTATTCAGAGACTTGTACCAAGTGCAACTTAGAGTATCATCCTTACCTTTCATGTGAGAGATATGAAGAATTCAAGGCAGACCCAGACTCATCTCTGAAAGAGTGGTGCAGAGGGAAAGAACAAGTTAAGAGCTGCTTGGCGTGTGGGTTTGTAATTGAGAAGGTAGATGGGTGCAACCACGTCGAGTGCAAGTGCGGAAAGCATGTCTGCTGGGTTTGCTTAGAGTTCTTTACTACCAGTGATGACTGTTATAACCATTTGAGAAGTATACACATGGCCATCATATAA 5211 0.4496 MKKASHPNPNPYATPRRDFHRPPPPHGGVSSPRPVLHRPYSHWKPRFHPHAARNDRPPEPYFRVELRLGSRPLRRDDVETLIDGCRFRHENFTFYPVDDVAAVLSYRSWEQARDSVVWFWKSRLAEKHDFTPALDSNVVVVKDDVDSRLRPVFARHVKGLMEGKEVKRWLEESDRFSKEISRVSSLLSNPLRIGAHNQLVEKKKGLVSEKNLVERRLKEFQSAMECMLKYLEDGDGVEGVNVFRFDGAFDWKRIHCMIKRECRRLEDGLPIYAYRRDILQEIHYQQIMVLIGETGSGKSTQLVQFLADSGIGTDESIVCTQPRKIAAKSVAQRVQDESSGCYEGQSIKCCSTFSSSHEFDSRITFMTDHCLLQHYMSDKNLSGVSCIIIDEAHERSLNTDLLLTLLKSLLCRRFEMRLIIMSATADAKQLSDYFFACGIFRVLGRSFPVDIKYVPSDYDRHSGSAVVASYVSDVVRMATEIHKTEKEGTILAFLTSQIEVEWACEKFQAPSAVALPLHGKLSSDEQFRVFQSYPEKRKVIFSTNLAETSLTIPGVKYVIDSGLVKGSRFDPGSGMNVLKVCWISQSSADQRAGRAGRTEPGVCYRLYSEPDYQSMDLNQEPEIRRVHLGVAVLRILALGVRNVEDFDFVDAPSPSSIDMAIRNLIQLGAIELNNNVHDLTPEGWCLVKMGIEPRLGKLILGCFKHGLGREGIILAAVMANASNIFCRVGSEFDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPRERKNKWCWENSINGKSMRRCQDTILELETCLEREHNLVTPSYWRWDPCMPSNHDKNLKRVILSSLAENVAMYSGSNQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFGELLSISNQYLVCVSAFDFQSLYNLCPAPLFDVSKMEKRRLQMKTLSGLGCILLKRFCGKANSNLLGLVSRIRKACMDERICVEVNVDQNEIHLFATSNDMDIALGLVNGVLEHERKWLSNECIDKCLYHGSGFSPPVALFGSGAEIKHLELEKRSLSVDVYHPNLNAIDDKELLMFFEKNTSGCICAVHKFTGNMRDEDREKWGRITFMSPDDVRRAAELDGQEFCGSSLKIVPSQLGGDKTFPFPAVKAKISWPRRLSKGFAIVKCDIMDVNYILRDFYNLAVGGRYVRCEVGKKSMDSVVINGLDKELSEAEILDVLRTATSRRILDFFLVRGDAVGNPPYSALEEALLKEIYPFLPKRNPHINPCRVQVFEPQPKDAFMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQQLFHSSLTFPIPVYRVIKEQLDKVLASFRNFKGLECNLDRTLNGSHRVKITANATRTVAEVRKLLEELSRGKTIEHDSLTPAVLQLMLSRDGFSLKNSLEQETGTYIIFDRHNLNLRVFGSPNNVALAQDKVIQSLLSLHEEKQLEIHLRGGDLPPDLMKQLIKNFGPDLRGLKERVPGVDLTLNIRRHVIILHGSKELKPRVEELIFEIARSSHHQVNNGPSCPICLCEVEDGYRLEGCGHLFCRMCLVEQFESAIKNKGTFPVCCAHMDHKDPPPPIPFPILLTDLRSLLFGDKLEDLFRASLEAFVTKSLKTYRFCPSPDCPSIYRTADPGSAGEPFVCGACYSETCTKCNLEYHPYLSCERYEEFKADPDSSLKEWCRGKEQVKSCLACGFVIEKVDGCNHVECKCGKHVCWVCLEFFTTSDDCYNHLRSIHMAII 1736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1936 1736 Pfam Zinc finger, C3HC4 type (RING finger) 1520 1562 IPR018957 GO:0046872
Aed7g1936 1736 Gene3D - 621 664 IPR042035 -
Aed7g1936 1736 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 473 639 IPR001650 -
Aed7g1936 1736 Pfam Helicase conserved C-terminal domain 481 598 IPR001650 -
Aed7g1936 1736 MobiDBLite consensus disorder prediction 1 37 - -
Aed7g1936 1736 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 823 902 IPR011709 -
Aed7g1936 1736 ProSitePatterns Zinc finger C2H2 type domain signature. 1711 1732 IPR013087 -
Aed7g1936 1736 SUPERFAMILY RING/U-box 1681 1728 - -
Aed7g1936 1736 ProSitePatterns Zinc finger RING-type signature. 1536 1545 IPR017907 -
Aed7g1936 1736 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 385 394 IPR002464 -
Aed7g1936 1736 ProSiteProfiles TRIAD supradomain profile. 1516 1731 IPR044066 -
Aed7g1936 1736 SMART ha2_5 659 755 IPR007502 GO:0004386
Aed7g1936 1736 Gene3D - 253 445 IPR027417 -
Aed7g1936 1736 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 279 443 IPR014001 -
Aed7g1936 1736 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1574 1652 - -
Aed7g1936 1736 Pfam Helicase associated domain (HA2) 660 754 IPR007502 GO:0004386
Aed7g1936 1736 SMART helicmild6 501 599 IPR001650 -
Aed7g1936 1736 CDD SF2_C_RHA 447 607 - -
Aed7g1936 1736 ProSiteProfiles Zinc finger RING-type profile. 1520 1562 IPR001841 -
Aed7g1936 1736 SUPERFAMILY RING/U-box 1513 1569 - -
Aed7g1936 1736 SUPERFAMILY RING/U-box 1608 1665 - -
Aed7g1936 1736 Gene3D - 1655 1733 - -
Aed7g1936 1736 SMART ring_2 1520 1562 IPR001841 -
Aed7g1936 1736 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 101 1474 - -
Aed7g1936 1736 PANTHER ATP-DEPENDENT RNA HELICASE 101 1474 - -
Aed7g1936 1736 SMART ibrneu5 1594 1659 IPR002867 -
Aed7g1936 1736 SMART ibrneu5 1660 1724 IPR002867 -
Aed7g1936 1736 Pfam IBR domain, a half RING-finger domain 1599 1659 IPR002867 -
Aed7g1936 1736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 821 IPR027417 -
Aed7g1936 1736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1506 1597 IPR013083 -
Aed7g1936 1736 SMART ultradead3 267 452 IPR014001 -
Aed7g1936 1736 CDD DEXHc_RHA-like 286 442 - -
Aed7g1936 1736 Gene3D - 446 618 IPR027417 -
Aed7g1936 1736 PANTHER ATP-DEPENDENT RNA HELICASE 1574 1652 - -
Aed7g1936 1736 Pfam DEAD/DEAH box helicase 277 430 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1936 Aed-Chr7 22364577 22372828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1936 1535 1729 C3H Transcription Factor Family AT2G31760 27.363 5.82e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1936 K12818 - gmx:100810008 3170.18