Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1935 ATGGTGATGAGAACCATTAATTATAGTCCAAAACCTTCGCCTCTTCACTCACCACCCGTCCCACTTTCAGTCCTTGATGGAGATCATCACATGCGTCTACACCTTGCACCCATCATTTTAATTGTCATAACTGGCACAACTTGCATAGTTATGTTCCTCTTTCTCTTCACCTTGTTCAAAATCCTAAGGCACCATCGTTATAGATACAACTTTACCAGAAGTAACCAACCCATATTATTCGACATTCGTAGAGATTTTCCCTTTTCCGATGACGAGGAACACGGTGAAGCAGCAGCCATTAGGCCGCAGCCCATGTGGTTCATCGCCACCGCCGCTGCCACCGCCACCGCCACCGCCACAGAGGAGGGTCTCCAACAATCAATCATAGACTCCATCACTGTTTGCGAATACAGAAAAGATGATGAAGGAACGTTGGTAAAAGAAACTGAGTGTCTTGTTTGCCTTGGTGAGTTTCAACAAGAGGAGAGTCTTAGAGTGTTGCCAAAGTGTAACCACGCTTTTCACGTTCCTTGCATTGATACTTGGTTGAGATCTCACAAGAGTTGTCCTTTGTGTCGTGCCGCTATTGTTCTTGATGTTGTTGCTAGTGTTGAGTTTGATTCAAGTGTTTCTGATATGAACGAATTATACATAGAAGAAAGTCGTGAAAGTGGTGGAGTGACGGTTGTTGGTGATGAAGAAGATGATGATTCTTCTGTGACAATTTATCCAAGTTTTCAAGATAAATGA 750 0.4347 MVMRTINYSPKPSPLHSPPVPLSVLDGDHHMRLHLAPIILIVITGTTCIVMFLFLFTLFKILRHHRYRYNFTRSNQPILFDIRRDFPFSDDEEHGEAAAIRPQPMWFIATAAATATATATEEGLQQSIIDSITVCEYRKDDEGTLVKETECLVCLGEFQQEESLRVLPKCNHAFHVPCIDTWLRSHKSCPLCRAAIVLDVVASVEFDSSVSDMNELYIEESRESGGVTVVGDEEDDDSSVTIYPSFQDK 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1935 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 197 IPR013083 -
Aed7g1935 249 CDD mRING-H2-C3H2C2D_ZSWM2 150 193 - -
Aed7g1935 249 SMART ring_2 151 192 IPR001841 -
Aed7g1935 249 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Aed7g1935 249 Pfam Ring finger domain 150 193 IPR001841 -
Aed7g1935 249 SUPERFAMILY RING/U-box 144 199 - -
Aed7g1935 249 MobiDBLite consensus disorder prediction 224 249 - -
Aed7g1935 249 PANTHER RING-H2 FINGER PROTEIN ATL54 11 236 - -
Aed7g1935 249 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 236 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1935 Aed-Chr7 22362346 22363095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1935 35 210 C3H Transcription Factor Family AT1G72220 39.205 1.13e-34 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1935 - - gmx:106794135 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1962 5 22521986 22522948 Aed7g1935 7 22362346 22363095 PCT