Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1932 ATGGAGGTGACCCTCTATATGTTCCTAGTGGAGGCTCTTTGGCAGTCATTATTATTATTATGTGTTCATGCACAGTTTAATAATCGTCCAATAAACTATTCTGCCTACGACGATATGAAAAAACCTCAAAACCAGAAAGTGACATGGGCTGTGTCGGGGTCATGTTTGCTCGCTACCCTCCTCGTTTTTCTTTTGCTTAAACTCCACGAGCGTTGTACCGATTCCCGGAACCGCCGCAACAGTACTGCTACAAAGCCCCTCGCGCTCGAAGTCGCAGCCGCCATCGAGAAGTGTCCGATAATGGATTACTCGGCGGTGAAGGAGCTTAGAGTGGGGAATGGGGCTGAGGAGTGCGCCGTGTGCTTGGTGGATTTCGTGGACAACGACACCATAAAGATGCTCCCAGAATGCCAACACTTTTTCCACCAGCTTTGCATCGATCAATGGTTACCCTCTCGCATGACCTGTCCCATTTGTCGCCACAAACTGACAACCTCTGATGATGATGACGGCGTCGTCGTCGACATCGATGTCCCAATGGAACAACAACAACAACATGGTACTACAGAGTCTACAGAGGTGGCAGCAACGGCGGCAGCAGCGGAACAACCTGAAACTGCAGAACATGAAACTGGCACTGACAATGTTGTCGAACTGGTTCAGTCTGAGGTTGCCTGA 678 0.4971 MEVTLYMFLVEALWQSLLLLCVHAQFNNRPINYSAYDDMKKPQNQKVTWAVSGSCLLATLLVFLLLKLHERCTDSRNRRNSTATKPLALEVAAAIEKCPIMDYSAVKELRVGNGAEECAVCLVDFVDNDTIKMLPECQHFFHQLCIDQWLPSRMTCPICRHKLTTSDDDDGVVVDIDVPMEQQQQHGTTESTEVAATAAAAEQPETAEHETGTDNVVELVQSEVA 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1932 225 Pfam Ring finger domain 117 160 IPR001841 -
Aed7g1932 225 SMART ring_2 118 159 IPR001841 -
Aed7g1932 225 MobiDBLite consensus disorder prediction 182 196 - -
Aed7g1932 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 170 IPR013083 -
Aed7g1932 225 SUPERFAMILY RING/U-box 117 166 - -
Aed7g1932 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 21 205 - -
Aed7g1932 225 MobiDBLite consensus disorder prediction 182 214 - -
Aed7g1932 225 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Aed7g1932 225 PANTHER RING FINGER DOMAIN-CONTAINING 21 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1932 Aed-Chr7 22346774 22347451 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1932 92 170 Rapid Response to Elicitors AT2G35000 48.780 7.32e-21 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1932 K10664 - gmx:100804862 233.032