Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1916 ATGTTAGGAGGGGAAGAGGGGAAGAAGGAGAAAGCCCCCGGTGGTGGTAGTAGCAGCGGTTCTGTTGCATGGAAAACTTACTCTCGTTCGGTTTCATGGACTGATATGTCTCCCAATAGCCGTAAGCCACCGACAAACAGCAAACCAGCAAGACCACTGTTGCCACCTCTTCAGCCTCTCTCAATCAACAAGCGCAGCGTTGAGGAATGGCCCAGTGCCGGATCTGATGATCTTGGAGTTTGGCCACTTCCTCAGACCCCAAGAGGCTCCATCAGACCCTACGATTCAAGTCAACCCACCAAGGATTTTCTCTTCAAGAGGGACAAACTCGCCTTCTTTGACAAAGAGTGTTCCAGAATTGCAGAGCACATATACTTGGGAAGTGACACAGTTGCCAAGAACCACGAACTCCTTAGACAGAACGGAATCACCCATGTCCTCAACTGTGTTGGCTTTGTCTGCCCCGAGTATTTCAAAGGCGATTTTGTGTACAAGACACTCTGGTTGCAGGATAGCCCCACGGAGGACATCACGAGCATCCTCTACGATGTTTTTGATTACTTTGAGGATGTTCGGGAGCAAGGTGGGCGTGTCCTTGTCCATTGTTGTCAGGGGGTTTCTCGATCAACGGCTCTGGTGATTGCTTACCTGATGTGGAGGGAAGGGCAGAGCTTCGAAGACGCTTTCCAGTTTGTGAAGACTGCAAGGGCTGTCACCAACCCGAACATGGGTTTTGCTTGCCAGCTTCTGCAGTGTCAGAAACGGGTCCACGCTATGCCGGCGAGTCCGAGCTCTGTTCTCAGGATGTACAGGATGACTCCTCACTCCCCCTATGACCCTCTCCATCTGGTCCCCAAGATGGTTAACCACCCAGGTGCAGAGGCTCTTGATTCCCGTGGGGCCTTCATTGTTCATATTCCTTCTGCTATCTTTGTTTGGAAGGGCAAACTTTGTAACTCGGTCATGTCGTGCAATGCAAGGAGTGCGGCCTTTCAGGTCATACGTTATGAGGGGGCTCAGGGTCCTATTCTCACCGTCCATGATGGTGAAGAACCACCTGGCTTTTGGATTGCTCTTTCCGACAAAGAAGAACAAGAAGTGGGCATGGTGGAGAGTGGTGAGCCAACGAGAAAAGTTGATGCTTATGATTTGGATTATGAGATTTTCCACAAGGCACTTGCTGGTGGGGTTGTTCCACCTTTTCCACTGTCTGATCCAAATTCAGAAACTTGTGTTCCTGCTAGAGAACAAGGTTGGGCAAGGCTGAGGAGGAAGTTTGTTAGTGGATTGCTCACATCCCCCAGATTGACCTGTGATGATGTTCATTTAACACCAGATTCCTTTGAATGCTGCTCTCCGGAAAAAGGAAGTCCTGAAGCCATGGACTTCTCTGTTCATGGTGTTGCTTCATCGTTGCCATTGTCTCCTCCTGGCACATCAAATCCTTTTCCCTGTTTCATAAGCTGCAGCCCAAAGTTCAATTCCAAGTCACCAACACTTTCACCTTCAAGTTCTGATTACGCCAGTTCGTTTACTTTTTCACCTTCATCTACCAACTGGTCCGACTTGTCCTTTGTGTCTTCTCGGCAGCCATCACCATCTGGACTTGAATCCGCCGAACCCTTTTATGTTAAAGACGCGTCTTTCTCAGAGCTCAAAGAAGATGTCTCTTCACCATTGGAGGAATTTTCAGCTGATCACACATTCGGAGGGGCAAACTCAAATTTGTCACTGAAAAGTTCTTCTTCACTCTCCATTGCAGAGCGCAGAGGGAGTAATCCACCGGTTCTGATGTTGCTACCCGCGGCCACTGAATCCTCTCACGTCCCCAATAACAACCTGGTAAGATCACTGTCTTTCTCATTGCCTGACTTAGATGATAATGTGGTGAAGGATGATACTTGCATGCAATCTGACCGTGAAAACAAAGGAAAATGGCTAATAATATCAGATGACTATACCATTAGTTCAGGCGTTGAACCGCGGAAAGAGGATCGTGGTACAGAGTTATGTAATATAATAATGGCTGAGCTTGACATAGAGGAAAATTGA 2052 0.482 MLGGEEGKKEKAPGGGSSSGSVAWKTYSRSVSWTDMSPNSRKPPTNSKPARPLLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSIRPYDSSQPTKDFLFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQNGITHVLNCVGFVCPEYFKGDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWREGQSFEDAFQFVKTARAVTNPNMGFACQLLQCQKRVHAMPASPSSVLRMYRMTPHSPYDPLHLVPKMVNHPGAEALDSRGAFIVHIPSAIFVWKGKLCNSVMSCNARSAAFQVIRYEGAQGPILTVHDGEEPPGFWIALSDKEEQEVGMVESGEPTRKVDAYDLDYEIFHKALAGGVVPPFPLSDPNSETCVPAREQGWARLRRKFVSGLLTSPRLTCDDVHLTPDSFECCSPEKGSPEAMDFSVHGVASSLPLSPPGTSNPFPCFISCSPKFNSKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSRQPSPSGLESAEPFYVKDASFSELKEDVSSPLEEFSADHTFGGANSNLSLKSSSSLSIAERRGSNPPVLMLLPAATESSHVPNNNLVRSLSFSLPDLDDNVVKDDTCMQSDRENKGKWLIISDDYTISSGVEPRKEDRGTELCNIIMAELDIEEN 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1916 683 ProSitePatterns Tyrosine specific protein phosphatases active site. 200 210 IPR016130 GO:0016311|GO:0016791
Aed7g1916 683 CDD DSP 117 251 - -
Aed7g1916 683 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 20 627 - -
Aed7g1916 683 SUPERFAMILY Actin depolymerizing proteins 261 366 - -
Aed7g1916 683 PANTHER MKPA PROTEIN 20 627 - -
Aed7g1916 683 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 108 258 IPR029021 -
Aed7g1916 683 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 175 236 IPR000387 GO:0016311|GO:0016791
Aed7g1916 683 ProSiteProfiles Dual specificity protein phosphatase domain profile. 116 258 IPR020422 GO:0006470|GO:0008138
Aed7g1916 683 MobiDBLite consensus disorder prediction 1 58 - -
Aed7g1916 683 Pfam Dual specificity phosphatase, catalytic domain 124 254 IPR000340 GO:0008138|GO:0016311
Aed7g1916 683 MobiDBLite consensus disorder prediction 19 46 - -
Aed7g1916 683 SMART dsp_5 116 255 IPR020422 GO:0006470|GO:0008138
Aed7g1916 683 Gene3D Severin 268 367 IPR029006 -
Aed7g1916 683 Gene3D Protein tyrosine phosphatase superfamily 97 258 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1916 Aed-Chr7 22222566 22224617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1916 37 152 Protein tyrosine phosphatase (PTP) family AT3G55270 51.587 5.65e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1916 - - gmx:100775448 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1916 7 22222566 22224617 Aed7g1916 7 22222566 22224617 ECH
Aed5g1943 5 22429172 22431136 Aed7g1916 7 22222566 22224617 PCT