Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1905 ATGGCCTTTTTTTCACTCACATTTATGTTCCAGTTCTTGCTTCTTGCCCCATCTATGATCTCTGCTTCTCCTGTACAAGACCCTGAATTAGTGGTCCAGGAAGTGCAAAAGAGCATCAATGGATCAATTAAGAGAAGCTTGGGGTATCTTTCTTGTGGAACGGGGAACCCCATTGATGATTGTTGGAGGTGCGACCCAAACTGGGAAAAGAACCGCAAGCGTCTAGCAAGTTGTGCAATTGGGTTCGGTAAGCACGCCATTGGTGGAAGAGATGGAAAACTATACGTGGTCACAGACCCTAGCGATAGCCCTGTGAACCCAAAGCCAGGAACTTTAAGACACGGTGTTATTCAACAAGAGCCACTGTGGATAATTTTCAAGCACGACATGGTGATAAAGCTACGCATGGATCTGCTAGTGAATTCTCACAAAACCATCGACGGAAGAGGAGCAACGATCCACGTGGCGGGAGGGCCTTGCATTAGGGTGCAGAAGAAGATGAACATCATAATCCATGGGATACACATCCACGATTGCAAGCGCGGTGGGAGTGGGTATGTGAGTGATTCACCTGGCCACCGTAGATGGAGTGCGAGATCGGACGGTGATGGGATAACGATATTCGGCGGGAGGAATGTTTGGGTGGACCATTGCTCATTGTGGAATTGCTACGACGGTCTGATTGACGTTGTTCATGGGTCAACGGGGATTACTATTTCGAACAACTACATGACGCGACATAACAAGGTGATGCTGTTGGGGCACAGTGATTCATATGAAGGTGACAGGAAAATGCAAGTGAGCGTTGCGTTCAACCGTTTTGGAGAGGGGCTTGGGGGGAGAATGCCGAGATGCAGGTTTGGATTCTTTCATGTTGTGAACAATGATTACATGCATTGGGAGCATTACGCAATAGGTGGGAGTTCGTCGCCGACTATATTCAGCCAAGGGAATAGGTTTCTTGCTCCTGACAGTGAAGACCGCAAAGAGGTGACTAAGCATTTTAAATCGGATAAGAGTGAGTGGAGGAAATGGAATTGGAGGTCTGAGGGAGATTTGATGTTGAATGGTGCGTTTTTCACGGCGTCAGGGGCGGGGGCGGGGGCGGCTGCTAGGTATGATAGAGCGTCAAGCATGGCAGCACGACCACCTATGCTTGTGCCTTCCATCACAGCGGGGGCTGGACCGCTTAGATGCAACAAGGCCAATCGATGCCAGAATTAA 1224 0.491 MAFFSLTFMFQFLLLAPSMISASPVQDPELVVQEVQKSINGSIKRSLGYLSCGTGNPIDDCWRCDPNWEKNRKRLASCAIGFGKHAIGGRDGKLYVVTDPSDSPVNPKPGTLRHGVIQQEPLWIIFKHDMVIKLRMDLLVNSHKTIDGRGATIHVAGGPCIRVQKKMNIIIHGIHIHDCKRGGSGYVSDSPGHRRWSARSDGDGITIFGGRNVWVDHCSLWNCYDGLIDVVHGSTGITISNNYMTRHNKVMLLGHSDSYEGDRKMQVSVAFNRFGEGLGGRMPRCRFGFFHVVNNDYMHWEHYAIGGSSSPTIFSQGNRFLAPDSEDRKEVTKHFKSDKSEWRKWNWRSEGDLMLNGAFFTASGAGAGAAARYDRASSMAARPPMLVPSITAGAGPLRCNKANRCQN 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1905 407 SMART amb_all 129 326 IPR002022 -
Aed7g1905 407 SUPERFAMILY Pectin lyase-like 44 399 IPR011050 -
Aed7g1905 407 Gene3D - 55 398 IPR012334 -
Aed7g1905 407 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Aed7g1905 407 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Aed7g1905 407 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Aed7g1905 407 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Aed7g1905 407 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Aed7g1905 407 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Aed7g1905 407 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Aed7g1905 407 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Aed7g1905 407 PANTHER PECTATE LYASE 7 402 - -
Aed7g1905 407 PANTHER PECTATE LYASE 18-RELATED 7 402 IPR045032 GO:0030570
Aed7g1905 407 Pfam Pectate lyase 137 320 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1905 Aed-Chr7 22141460 22143445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1905 2 405 Polysaccharide Lyase AT5G63180 65.517 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1905 K01728 - gmx:100803068 716.842