Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1904 ATGGAATTTCCATTTCCAATTCCAATTCCAATTCCACTCTCATTTATGTTACTCTTCCTACTTCTTGTACCTTCCTGCATTTGCTCTTCCCCACTTCAAGATCCCGAATTAGTGGTCGAAGATGTACAAAAGAGCATTAATGCCTCTAGGAGGAACTTAGCATTTCTGTCTTGTGGAACGGGGAACCCCATTGATGATTGTTGGAGATGCGACCCCAATTGGGAAAAGAACCGCAAGCGTCTAGCAGATTGTTCCATTGGGTTTGGAAAGCACGCAATTGGAGGAAGAGATGGTAAAATATACATTGTGACTGACCCTGGTGACCACCCTGTGAACCCAAAGCCAGGAACACTAAGATACGGTGTGATCCAAGAGGAACCACTGTGGATCATATTCAAGCGTGACATGGTGATCAAGCTGAAGGAAGAGCTTATGATGAATTCCTTCAAGACCATTGATGGCAGAGGGGTGAGTGTGCACATTTCTGGTGGACCTTGCATTACTATACAGTATGTGACCAACATTATAATTCATGGGATTAACATCCATGATTGCAAGCAAGGAGGGAATGCTTATGTGAGGGACTCTCCTACTCACTATGGGTGGAGGACTCTCTCTGATGGTGATGGAGTTTCGATCTTTGGTGGGAGTTTTGTTTGGGTGGATCACTGCTCTCTCTCTAATTGCCGTGATGGGTTGATTGATGCCATTCATGGATCCACGGCCATCACCATATCTAACAATTTCTTCACCCAACATAACAAGGTCATGCTTTTGGGCCACAGTGATTCTTTCACTAGGGACAAGAACATGCAAGTCACTATTGCCTTTAACCATTTTGGAGAAGGCCTAGTTCAGAGAATGCCAAGATGCAGGCATGGATACTTTCATGTGGTGAACAATGACTACACCCAATGGAAAATGTATGCCATAGGGGGGAGTGCTGCCCCAACTATCAATAGTCAAGGGAATAGATTTCTTGCTCCTAATGACAATACCTTCAAAGAGGTGACAAAGAGGGAGGATACAGCACAGAGCACGTGGAAGAATTGGAATTGGAGGTCAAATGGGGATTTGTTGTTAAACGGTGCGTTTTTTAGGGCATCAGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCATCCAGTTTAGCAGCAAAATCATCTTCACTTGTGAGTTCTCTAACAGCATCAGCAGGATCACTTAGATGCAGACAGGGTTCACGCTGCTGA 1230 0.4472 MEFPFPIPIPIPLSFMLLFLLLVPSCICSSPLQDPELVVEDVQKSINASRRNLAFLSCGTGNPIDDCWRCDPNWEKNRKRLADCSIGFGKHAIGGRDGKIYIVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKEELMMNSFKTIDGRGVSVHISGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGVSIFGGSFVWVDHCSLSNCRDGLIDAIHGSTAITISNNFFTQHNKVMLLGHSDSFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTQWKMYAIGGSAAPTINSQGNRFLAPNDNTFKEVTKREDTAQSTWKNWNWRSNGDLLLNGAFFRASGAGASSSYARASSLAAKSSSLVSSLTASAGSLRCRQGSRC 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1904 409 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Aed7g1904 409 PRINTS Pollen allergen Amb family signature 84 101 IPR018082 -
Aed7g1904 409 PRINTS Pollen allergen Amb family signature 380 403 IPR018082 -
Aed7g1904 409 PRINTS Pollen allergen Amb family signature 107 132 IPR018082 -
Aed7g1904 409 PRINTS Pollen allergen Amb family signature 207 228 IPR018082 -
Aed7g1904 409 PRINTS Pollen allergen Amb family signature 143 159 IPR018082 -
Aed7g1904 409 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Aed7g1904 409 PRINTS Pollen allergen Amb family signature 351 375 IPR018082 -
Aed7g1904 409 PANTHER PECTATE LYASE 18-RELATED 12 406 IPR045032 GO:0030570
Aed7g1904 409 SMART amb_all 135 332 IPR002022 -
Aed7g1904 409 SUPERFAMILY Pectin lyase-like 46 403 IPR011050 -
Aed7g1904 409 Gene3D - 61 402 IPR012334 -
Aed7g1904 409 Pfam Pectate lyase 168 326 IPR002022 -
Aed7g1904 409 PANTHER PECTATE LYASE 12 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1904 Aed-Chr7 22135608 22137811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1904 13 409 Polysaccharide Lyase AT5G63180 76.733 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1904 K01728 - gmx:100782388 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1904 7 22135608 22137811 Aed7g1904 7 22135608 22137811 ECH
Aed7g1904 7 22135608 22137811 Aed10g0857 10 7183578 7186228 ECH
Aed7g1904 7 22135608 22137811 Aed6g1379 6 18382204 18384155 ECH