LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed7g1897	ATGAAAATGGAGTCTCTGGATTTGTTCCTAGTAGCAACAACCACCATAGGCTTCATTAGTGTGTGCAGTGCCATTGTCAATTTTCTCAGGTGGGTATGGGTAATGTTCTTGAGGCCACCAAAGAATCTCAAACAGTATGGTTCATGGGCTCTAATCACTGGCTCCACCGATGGAATTGGTAAAGCCATGGCCTTTGAATTCGCTTCTAAGGGACTCAACATTCTCTTGGTTGGTCGAAACCTTATAAAACTTGAGGCAACATCCAAGGAAATAAAGGATAGACACAATGATGTTGAGGTCAAGTTTGTGGTCATTGACATGCAAAAAGTTGAGGGAGAGGAAATAGCAAAAAGAGTAGAGGAAGCAATACATGGTTTGGATATAGGCTTGCTTGTTAATGCTGCAGGCGTGGCTTACCCTTATGCTAGATTCTTTCATGAGGTTGATTCGGAGCTTATGGATGCGGTTATCAAAGTGAACTTGGAGGGAGCAACTTGGGTCACAAAGGCAGTGCTTCCCACTATGATCAAGAAGAAAAAAGGAGCAATAGTTAACATTGGCTCTGGTTCCACTGTTGTGATTCCTTCATATCCTCTAGTCACCCTCTATGCTGCTACAAAAGCATACCTTACAATGTTCTCGAGATGCATCAGTTTGGAATACAAACATCAAGGAATTGACATCCAATGCCAGGTTCCATTATTTGTGTCAACGAAGATGGCCAAAATGAGGACATCACTTTTTGTACCAACGGCAGAAATGTATAGTAAAACATGCACAAAGTGGATTGGCTACGAAAAACTGGTTGAGCCATACTTCCTCCATTCTGTGCAGGGGTTTCTCTTAAGGGCAATTCCTGATGCACTTTTGGATTCCTATATGCTGCGCTATTCTATGCTATGCATACAGGTTCCATTGTACGTGTCAACAAAGATGACCAACATGAAGCCATCACTTTTTGTACCATCGGCGGAAATGTATAGTAAAACATGCACAAAGTGGATTGGTTACGATAAAATAGTTCAGCCATACTTCTTCCATTCTGTGAAGGGGTTTCTCTTCAGGGCATTTCCTGATGCACTTTTGGATTCCTATATGATGCGCTGTTTTCTTCCTTTGCGTGAAAGTGCACTCTCCATGGACTCCAACATTAAACAACCATTAGCAGCATCTACTTCTGAAGAACCAAACATCATTAAGTCCTAG	1206	0.4196	MKMESLDLFLVATTTIGFISVCSAIVNFLRWVWVMFLRPPKNLKQYGSWALITGSTDGIGKAMAFEFASKGLNILLVGRNLIKLEATSKEIKDRHNDVEVKFVVIDMQKVEGEEIAKRVEEAIHGLDIGLLVNAAGVAYPYARFFHEVDSELMDAVIKVNLEGATWVTKAVLPTMIKKKKGAIVNIGSGSTVVIPSYPLVTLYAATKAYLTMFSRCISLEYKHQGIDIQCQVPLFVSTKMAKMRTSLFVPTAEMYSKTCTKWIGYEKLVEPYFLHSVQGFLLRAIPDALLDSYMLRYSMLCIQVPLYVSTKMTNMKPSLFVPSAEMYSKTCTKWIGYDKIVQPYFFHSVKGFLFRAFPDALLDSYMMRCFLPLRESALSMDSNIKQPLAASTSEEPNIIKS	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed7g1897	401	PANTHER	ENOYL-(ACYL CARRIER) REDUCTASE	303	382	-	-
	Aed7g1897	401	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	43	300	IPR036291	-
	Aed7g1897	401	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	126	137	IPR002347	-
	Aed7g1897	401	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	181	189	IPR002347	-
	Aed7g1897	401	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	203	222	IPR002347	-
	Aed7g1897	401	PANTHER	RH59310P	303	382	-	-
	Aed7g1897	401	PIRSF	11-beta-HSD1	1	300	-	-
	Aed7g1897	401	PIRSF	11-beta-HSD1	299	380	-	-
	Aed7g1897	401	CDD	17beta-HSD1_like_SDR_c	47	286	-	-
	Aed7g1897	401	Gene3D	-	43	265	-	-
	Aed7g1897	401	PRINTS	Glucose/ribitol dehydrogenase family signature	126	137	IPR002347	-
	Aed7g1897	401	PRINTS	Glucose/ribitol dehydrogenase family signature	175	191	IPR002347	-
	Aed7g1897	401	PRINTS	Glucose/ribitol dehydrogenase family signature	224	241	IPR002347	-
	Aed7g1897	401	PRINTS	Glucose/ribitol dehydrogenase family signature	203	222	IPR002347	-
	Aed7g1897	401	PRINTS	Glucose/ribitol dehydrogenase family signature	49	66	IPR002347	-
	Aed7g1897	401	PANTHER	RH59310P	5	299	-	-
	Aed7g1897	401	Pfam	short chain dehydrogenase	49	243	IPR002347	-
	Aed7g1897	401	ProSitePatterns	Short-chain dehydrogenases/reductases family signature.	190	218	IPR020904	GO:0016491
	Aed7g1897	401	PANTHER	ENOYL-(ACYL CARRIER) REDUCTASE	5	299	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed7g1897	Aed-Chr7	22086863	22094824	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed7g1897	303	386	Lipid Metabolism Gene Families	AT1G67730	36.471	1.40e-11	63.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed7g1897	7	22086863	22094824	Aed7g1897	7	22086863	22094824	ECH
	Aed5g1881	5	22051267	22054403	Aed7g1897	7	22086863	22094824	PCT