Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1890 ATGGATAATGGTTGCTTCTCTTCCCCTCGACGTGATTTTCCTGCTGGGCTCAGAGTTCTAGTTGTGGATGATGATCCAACGTGGCTCAAGATCCTTGAGAAGATGCTTAAGAAGTGCAATTATGAAGTGACTACATGTTGTTTAGCAAGGCATGCTCTAAGCTTGCTTCGCGAAAGGAAAGATGGATATGATATCGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTTAAACTTCTTGAGCATGTCGGGCTTGAGATGGATCTCCCTAGCATTCAATTAATCAGAAATGGATCAGAGCTATCAGATGATGGGAACCTGTTTGCTGTAGAAGATGTTACCTCAACAAAGAAAAGAAAAGATGCAGAGAACAAACACGATGACAAAGAATGTTTGGATCCATCATCCACCAAGAAAGCTAGAGTAGTCTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCGGTGAATCAGATAGGATTTGATAAAGTGGGGCCGAAGAAAATACTTGATTTGATGAACGTTCCATGGCTAACTAGAGAGAATGTTGCTAGCCACTTGCAGAAATACAGGCTTTATTTGAGTAGGATTCAGAAAGAAAACGATCAGAGATCTCCCTCAAGTGGAATGAAGCATTCAGATTTTCCTTCAAAAGATCTAGGAAGTTTTGGTTTTCAGACCCCAGTAAACAAAGAACAAAATGATGTTTCCATTGACAGCTACAATTATTCGGATGGATCGTTACAACAACTTCAGAATGTGGAAACTAAAAGTCATGAAGTTGATCCAAAGGGAATTGTTTCACAGTCCACCACAGCAAAAAAAGGAAGGGCTTTGACTAGTGACATTGCTGACACAAATATGAAGGAGAGTCTAAGGGTTGGCCTTAATCAACCTTTTGCCCCTCTGGAGTCAGAAGGAAATCATGCAGTGTTTGATTGCTCCATGCCAACACAATACTCTTGGACTGAAGTTCCACACATGCAACTCAAAGAAGAACACAAGTCACTTGTTCTTATAGAAGATAGCTTCAATCAGTTGCCATTACATGGTAAGCAGCATCACATCCAAGTGGATCAATCACAATCCGTTGCTTCAATAAGTTCTGCTCCCCCGATACCTGAGGAAGAGGTTGCTGCTTGTATAGAACCAAAACCTTTGTTTGCAGATTACAAAAATGATTATACCAGTTCTGTGAGTTCAATAGGGATTGCAGTTGACACCTTTCCCGTTCAACCAGGAAGTCTTGTTATGAATAATCAATCTTCAGAACCCATTTCCACTACAAATTCAGGATTGAAAACACAGGGATATAATAATAATCTCAGTAGCATTTCTGATCTGGAAATTTACCCAAGAAACCTTCTTTTGGGAAGTGCGGCAGCTTCTGCACCATTGGATGAGGACTTGCATTTCTATTGGCTACAAGGTGAATGCTATAATATGAACTTCGGTCTGCAGAATATAGGAATGTCTGAATATTATGATCCAGGACTCATATCAGAAGCTCCAACTCACTTATATGATTCAGCTGATTACTCAGTTATAGATCAAGGTCTATTCATAGCATGA 1575 0.4019 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPSIQLIRNGSELSDDGNLFAVEDVTSTKKRKDAENKHDDKECLDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRIQKENDQRSPSSGMKHSDFPSKDLGSFGFQTPVNKEQNDVSIDSYNYSDGSLQQLQNVETKSHEVDPKGIVSQSTTAKKGRALTSDIADTNMKESLRVGLNQPFAPLESEGNHAVFDCSMPTQYSWTEVPHMQLKEEHKSLVLIEDSFNQLPLHGKQHHIQVDQSQSVASISSAPPIPEEEVAACIEPKPLFADYKNDYTSSVSSIGIAVDTFPVQPGSLVMNNQSSEPISTTNSGLKTQGYNNNLSSISDLEIYPRNLLLGSAAASAPLDEDLHFYWLQGECYNMNFGLQNIGMSEYYDPGLISEAPTHLYDSADYSVIDQGLFIA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1890 524 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 140 193 IPR006447 GO:0003677
Aed7g1890 524 Gene3D - 5 105 - -
Aed7g1890 524 SMART REC_2 17 174 IPR001789 GO:0000160
Aed7g1890 524 CDD REC_typeB_ARR-like 19 93 - -
Aed7g1890 524 Pfam Response regulator receiver domain 19 84 IPR001789 GO:0000160
Aed7g1890 524 PANTHER TWO-COMPONENT RESPONSE REGULATOR 96 499 IPR045279 GO:0009736
Aed7g1890 524 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Aed7g1890 524 SUPERFAMILY CheY-like 16 91 IPR011006 -
Aed7g1890 524 MobiDBLite consensus disorder prediction 200 229 - -
Aed7g1890 524 Gene3D - 136 199 - -
Aed7g1890 524 PANTHER TWO-COMPONENT RESPONSE REGULATOR 96 499 - -
Aed7g1890 524 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 94 IPR045279 GO:0009736
Aed7g1890 524 SUPERFAMILY Homeodomain-like 138 197 IPR009057 -
Aed7g1890 524 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 94 - -
Aed7g1890 524 Pfam Myb-like DNA-binding domain 142 192 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1890 Aed-Chr7 22041650 22045325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1890 13 206 Response Regulator Gene Family AT4G31920 41.772 6.88e-49 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aed7g1890 Response_reg 4.8e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1890 - K14491 gmx:100799877 833.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1890 7 22041650 22045325 Aed5g1593 5 20173036 20176599 PCT