Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1868 ATGATGGTTTTGTCGAATTCTGGTGCCGGCCTTAGGAAACAGGTTTTTCCCGTAGATTACGAAACGGAGATGTCGCAGCGTTTCGTAGACGCCGCTCATTACGGCGACACAGACGCTGCGTTCGAATGCATGGCGAATCCCTCGGTGGACGTTAACTTCGTCGGAACGGTGTCGTTCAAGTCCAAAACCGCGGAGATTGAGCTGCACGACGAGTCGCCTCACCGAGTTAACTCGGCATACGAGGAGTTCAAGACCGACCTCACTGCTCTGTTTTTGGCTGCGCACACAGGGAATTTGACACTCCTTCGGAAGCTTCTGGTAACGCTGCTTCTTAAACGTCGTTCTTGTTCTTTGGTTATGTTATGTTATAATGTTGGAGCTAATGTAAACATGAGATTGTTCCGGGGCTATGCCACAACAGCATCAGTGAGAGAAGGGCATCTAAAAGTATTGGAGGTCCTTATCAATGCGGGGGCATCACAACTTGCATGCGAGGAGGCTTTGATGGAAGCAAGTTACTTGGGGAGGGCCAGGTTTGCGGAACTACTCATGCAGTCCAACATGGTTCGTCCTCATGTTGCAGTTCATGCCCTTGTCTCTGCTTGTTGCCGAGGCTTCGACGAGGTTGTTGATGTACTCATCAAGCATGGAGTGGATGCCAATGCAATTGATAGGACTTTGCTTCAATCTTCAAAGCCATTTCTTCACGCTAATGTTGATTGCAATGCAGTATTCGCCGCTGTGGTCAGCAGGCAGATTAATGTTGTTAGATTACTGTTGCAGGTTGGCGTAAGGCTTGATATCAAGGTCAAACTGGGGGCTTGGTCGTGGGACACAGACACAGGAGAAGAGTTTCGTGTAGGTGTTGGACTAGCTGAGGCTTATCCAATCACATGGTGTGCTGTGGAGTATTTTGAATCCACTGGTGCTATATTGCACATGCTGCTCTTCCATCTCTCACCTGATAGCTTGCACATTGGGAGGACTCTCTTACACCATGCTATCATTTGTAACAACGAAAAAGCCGTAAATGTACTTCTAAACAATGGTGCTGATGCAGAAGTGGTAGTGCAAACCCCTGAAGAAACCAGTGAACACCCTATTCACATGGCTGTACGGCTTGGATCATGTAACATTCTTCAGTGCCTTATTAATGGTGGTTGTAACTTGGACCCTCAAACAAAATCTGGAGACACAGCATTGATGATATGTGCAAGGAACAAACATGAGAAGTGCCTTGGAGTTCTAGTAGCAGCAGGTGCTGATTTGGGTATGGTAAATTCATCTGGTCACTGTGCAACTTCAATTGCAAACTGTGTTCAGTGGACTAAAGTCTTCCAGAAGGCAATCTTGGATGTAATCAGAGCCGGGAAGCTTATTAAATCAAGCAATGCCTCTAGATTCTCCGCTTTGTTATTTGTAACTCGTGCAAATGATATAGAGGGTTTGAAGAAACTCATTGAAATTGAAAATGGGAACAATATGGATCTAGATGAACAAAATGGGAATGGATTTTCAGCTGCTATGGTAGCTGCTGTAGGGGGTAATGTGGAGGCTTTCAAGTTGCTTCTATATGCTGGTGCTGATGTAACTACGCTAAAAAACAAGTATGGTTTGACAGCACTTGACCTCATAGACGTGAACCAAAATGGTGAAGTGTTTCACAAGGTAATGCTTGAATATGCACTTAAAAAGGGACGGAATGGTTCAATTGAGGTGAATCCTCTCCACCGTGCAGCTTGCTATGGGGACATCAACATTGTTCACAAACTACTAAAAGAAGGGTATGATGCCAATGCTTTTGATGGTCAAGGATACACTCCTTTGATGCTAGCAGCAAGAGGATGCCGCGGCGAAATGTGTGAGCTTTTGATCTCATATGGAGCCAAATGTGATACTCAAAATGAGAGACATGAGACAGCACTTTTACTTGCAAGAGAAAATGGTTCAGTAAATAATGCAGAACGTGTGATATTGGATGAGCTAGCTCGAAGACTAGTCTTGTGTGGTGCTCGTGTGATGAAGCATACAAAGTGTGGTAAAGGTTCACCTCATGTTAAGTTACTAGTAATGGTTGGAGCTGCTGGAATCTTGCGTTGGGGAAAATCAAGTAAGAGAAACGTGATTTGTAAAGAGGCTGAGGTTGGACCTAGTGTGAAATTTCGATGGAATCGCAGGAGGAAGTTTGATGTTGATGAGCCAGGAATGTTCCATGTGGTCACTACAAAAAATAAGCAGGTACATTTTGTGTGTGAAGGTGGGGTTGAAAGGGCTGAGTTGTGGGTAAGGGGGGTTAGATTGGTAACTAGAGAAGCCATTTTTGGTCGAAGAGCTGATCAAGTTTGA 2346 0.4493 MMVLSNSGAGLRKQVFPVDYETEMSQRFVDAAHYGDTDAAFECMANPSVDVNFVGTVSFKSKTAEIELHDESPHRVNSAYEEFKTDLTALFLAAHTGNLTLLRKLLVTLLLKRRSCSLVMLCYNVGANVNMRLFRGYATTASVREGHLKVLEVLINAGASQLACEEALMEASYLGRARFAELLMQSNMVRPHVAVHALVSACCRGFDEVVDVLIKHGVDANAIDRTLLQSSKPFLHANVDCNAVFAAVVSRQINVVRLLLQVGVRLDIKVKLGAWSWDTDTGEEFRVGVGLAEAYPITWCAVEYFESTGAILHMLLFHLSPDSLHIGRTLLHHAIICNNEKAVNVLLNNGADAEVVVQTPEETSEHPIHMAVRLGSCNILQCLINGGCNLDPQTKSGDTALMICARNKHEKCLGVLVAAGADLGMVNSSGHCATSIANCVQWTKVFQKAILDVIRAGKLIKSSNASRFSALLFVTRANDIEGLKKLIEIENGNNMDLDEQNGNGFSAAMVAAVGGNVEAFKLLLYAGADVTTLKNKYGLTALDLIDVNQNGEVFHKVMLEYALKKGRNGSIEVNPLHRAACYGDINIVHKLLKEGYDANAFDGQGYTPLMLAARGCRGEMCELLISYGAKCDTQNERHETALLLARENGSVNNAERVILDELARRLVLCGARVMKHTKCGKGSPHVKLLVMVGAAGILRWGKSSKRNVICKEAEVGPSVKFRWNRRRKFDVDEPGMFHVVTTKNKQVHFVCEGGVERAELWVRGVRLVTREAIFGRRADQV 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1868 781 Pfam Ankyrin repeats (3 copies) 559 634 IPR002110 GO:0005515
Aed7g1868 781 Pfam Ankyrin repeats (3 copies) 331 425 IPR002110 GO:0005515
Aed7g1868 781 Gene3D - 555 714 IPR036770 -
Aed7g1868 781 ProSiteProfiles Ankyrin repeat profile. 604 636 IPR002110 GO:0005515
Aed7g1868 781 ProSiteProfiles Ankyrin repeat profile. 571 603 IPR002110 GO:0005515
Aed7g1868 781 ProSiteProfiles Ankyrin repeat region circular profile. 326 355 - -
Aed7g1868 781 ProSiteProfiles Ankyrin repeat region circular profile. 503 530 - -
Aed7g1868 781 PANTHER ANKYRIN REPEAT-CONTAINING 9 775 - -
Aed7g1868 781 Gene3D - 191 279 IPR036770 -
Aed7g1868 781 ProSiteProfiles Ankyrin repeat profile. 363 395 IPR002110 GO:0005515
Aed7g1868 781 ProSiteProfiles Ankyrin repeat profile. 326 358 IPR002110 GO:0005515
Aed7g1868 781 Gene3D - 450 554 IPR036770 -
Aed7g1868 781 SUPERFAMILY Ankyrin repeat 30 273 IPR036770 -
Aed7g1868 781 ProSiteProfiles Ankyrin repeat profile. 396 428 IPR002110 GO:0005515
Aed7g1868 781 ProSiteProfiles Ankyrin repeat profile. 503 535 IPR002110 GO:0005515
Aed7g1868 781 SUPERFAMILY Ankyrin repeat 327 657 IPR036770 -
Aed7g1868 781 Gene3D - 17 190 IPR036770 -
Aed7g1868 781 PANTHER ANKYRIN DOMAIN PROTEIN 9 775 - -
Aed7g1868 781 ProSiteProfiles Ankyrin repeat region circular profile. 604 636 - -
Aed7g1868 781 SMART ANK_2a 396 425 IPR002110 GO:0005515
Aed7g1868 781 SMART ANK_2a 571 600 IPR002110 GO:0005515
Aed7g1868 781 SMART ANK_2a 503 532 IPR002110 GO:0005515
Aed7g1868 781 SMART ANK_2a 363 392 IPR002110 GO:0005515
Aed7g1868 781 SMART ANK_2a 239 268 IPR002110 GO:0005515
Aed7g1868 781 SMART ANK_2a 134 163 IPR002110 GO:0005515
Aed7g1868 781 SMART ANK_2a 85 114 IPR002110 GO:0005515
Aed7g1868 781 SMART ANK_2a 466 497 IPR002110 GO:0005515
Aed7g1868 781 SMART ANK_2a 604 633 IPR002110 GO:0005515
Aed7g1868 781 SMART ANK_2a 193 222 IPR002110 GO:0005515
Aed7g1868 781 SMART ANK_2a 326 355 IPR002110 GO:0005515
Aed7g1868 781 Gene3D - 322 449 IPR036770 -
Aed7g1868 781 ProSiteProfiles Ankyrin repeat region circular profile. 571 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1868 Aed-Chr7 21871419 21876424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1868 379 555 Ion Channels AT2G25600 28.415 1.74e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1868 - - gmx:100795638 1363.98