Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1866 ATGGATGTAAGCGAAATTGAAGAAAATCTTTTTGCAACAACCGATGCCAAGTTACATGGAGAAATGTGCAAGTGTCTTTCTGCAATATACTGTAAGATATTGTCATTATTTCCTTCTTTAGAAGCAGCTAGGCCTCGGAGCAAATCTGGAATTCAGGCATTATGTTCGTTGCATGTAGCCTTAGAAAAGGCAAAAAATGTTCTTCAGCACTGCTCAGAGTCTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTGCTAAAATTTGAGAAGGCTAAATGTGCTCTCGAGGACAGTCTTAAACGGGTGGAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGATGAAATTGTGAAAGAACTTGCAAGTATGGTATTTGCACTTGACCCATCAGAGAAACAAGTTGGAGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTTAATGACTCTAATGACAGTAATGAACTTGAATGTTTTCATTTGGCTGCTACTAGACTTGGAATCACTTCTTCAAGAACAGCTCTTACAGAAAGAAGAGCTCTAAAAAAACTCATAGAAAGGGCTCGTGTTGAGGAAGACAAGCGGAAAGAATCAATTATTGCTTTTCTTTTACACCTTATGAGGAAGTATTCCAAGTTATTTAGAAGTGAGTTCTCTGACGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTCCTGTTGGTCATTGTCATGCCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAATAATAGGAAATCAGGCCAGATGCTCCTTCCACCCGAAGAGTTAAGGTGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGTATAGAGAAATGGTTCAGAGATGGACACAACACCTGCCCAAAGACTCAACAGAATCTTTCACATCTTTGTCTGACTCCTAATTACTGTGTCAAGGGTCTTGTGGCTAGTTGGTGTGAACATAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCAGATACTGAATCCACAAATTCAAGATCCGTAAACAGTGTCGGCTCTTGCAAGTTGAAGGGTGTGAAAGTTGTTCCTATAGAAGAGAGTGGCATCTCAGAGAAAACAGGGGGAAATGCAACTGAAAGTTTTTCTGCAAAAGAGGAAGATAATGATCGGTATCTTAGTTTTCTTAAAGTCTTGACAGAAGCGAACAATTGGAAGAGGAAGTGTAAAGTGGTTGAACAATTGAGGCTGTTGCTGCGGGATGACGAGGAAGCCAGAATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTATGCAGTTTGTGCAATCAGCTGTGCATGAAGGGAATGTCATGGCTCTTGAAAATGGAGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAATCTTGTTGTTGTTGGAGGAAATGATTTCAAAAACTAGTTCCTATGGTGGTGCAGTTGCCCTGTATCTGAATCTTTCTTGCCTTGAAGAAGCCAAGCATGTGATTGGCACGAGTCAAGCTGTCCAGTTCCTAATCCATATTCTTCAAGCCAAGACAGAAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCTACTGTGCCCTCCAATATTCCAAACCTCCTTTCATCTGGCATCATTGATAGCCTACAATCTCTTCTTGTAGGCAAGGGTGATTGCATGTGGACAGAAAAATGCATAGCTGTTCTGATAAATTTGGCGATTTCTCCAGGGGGAAGAGAGGAAATGATGTTGGCTCCTGGACTCATAAGTGCCTTGGCTTCCACTCTAGATACCGGTGAGCCCATGGAGCAGGAGCAAGCTACCTCTTGTCTCCTAATATTGTGTAACAGGAGTGAGGAGTGTTGTGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCGGTGAATGGGACCATGAGAGGAAGAGAAAAGGCTCAAAAGCTCTTGATGGTCTTTCGAGAGCAGCGACAACGAGACCATTCCCCTGGTAAGACTGATCAATGTGAATCTGAACATAGTAGTGATTTGTCTATACCTCCTGAAATGAAGCCGCTATCTAAATCAATATCTAGAAGAAAGGTCGTGGGGAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAATGTTAA 2301 0.412 MDVSEIEENLFATTDAKLHGEMCKCLSAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSESSKLYLAITGDSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIDEIVKELASMVFALDPSEKQVGDDLIALLQQGRKFNDSNDSNELECFHLAATRLGITSSRTALTERRALKKLIERARVEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGIPVGHCHAFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHNTCPKTQQNLSHLCLTPNYCVKGLVASWCEHNGVPIPEGPPESLDFNYWRLALSDTESTNSRSVNSVGSCKLKGVKVVPIEESGISEKTGGNATESFSAKEEDNDRYLSFLKVLTEANNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVEALMQFVQSAVHEGNVMALENGAMALFNLAVNNNRNKEIMISAGILLLLEEMISKTSSYGGAVALYLNLSCLEEAKHVIGTSQAVQFLIHILQAKTEEVQCKIDSLHALYNLSTVPSNIPNLLSSGIIDSLQSLLVGKGDCMWTEKCIAVLINLAISPGGREEMMLAPGLISALASTLDTGEPMEQEQATSCLLILCNRSEECCEMVLQEGVIPALVSISVNGTMRGREKAQKLLMVFREQRQRDHSPGKTDQCESEHSSDLSIPPEMKPLSKSISRRKVVGKAFSFLWKSKSYSVYQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1866 766 SUPERFAMILY ARM repeat 427 707 IPR016024 -
Aed7g1866 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
Aed7g1866 766 Gene3D - 423 607 IPR011989 -
Aed7g1866 766 MobiDBLite consensus disorder prediction 708 736 - -
Aed7g1866 766 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 750 - -
Aed7g1866 766 PANTHER U BOX DOMAIN-CONTAINING 1 750 - -
Aed7g1866 766 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Aed7g1866 766 CDD RING-Ubox_PUB 283 325 IPR045210 -
Aed7g1866 766 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Aed7g1866 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Aed7g1866 766 MobiDBLite consensus disorder prediction 708 724 - -
Aed7g1866 766 SMART arm_5 539 581 IPR000225 GO:0005515
Aed7g1866 766 SMART arm_5 624 665 IPR000225 GO:0005515
Aed7g1866 766 SMART arm_5 454 498 IPR000225 GO:0005515
Aed7g1866 766 Gene3D - 608 709 IPR011989 -
Aed7g1866 766 SUPERFAMILY RING/U-box 276 354 - -
Aed7g1866 766 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1866 Aed-Chr7 21861404 21867196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1866 1 765 U-box Gene Family AT1G24330 66.239 0.0 1027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1866 - - gmx:100804344 1376.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1866 7 21861404 21867196 Aed5g1621 5 20372474 20378005 PCT