Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1861 ATGGACCCATCTTCTACCAAACCTCGAACTTCATTGGGTAACCTAGTTTGGTTCTTCCCTCAGCTGTTGCTCTTCTTCAACCCTGCGGAAGAGGAAGAACACGCCGCCGCAGCCATGGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTCCTGCAAGGCCAGAGGCGCTGACCTCAGGGTTCATTTTAAGAACACAAGGGAGACAGCGTTTGCCATCAGGAAGTTGCCCTTGGTTAAAGCTAAAAGATACTTAGAGGATGTTTTGGCCCACAAACAGGCCATTCCCTTCCGACGCTTCTGTCGTGGAGTTGGGAGGACAGCCCAAGCCAAGAGCAGACACTCCAATGGGCAAGGACGCTGGCCTGCCAAATCAGCTAAATTCATTCTAGATTTGCTTAAAAATGCTGAGAGTAATGCCGAAGTTAATCAAGCACAGAAGCAAAGACGCCGTACCTACCGAGCTCATGGAAGAATCAACCCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTGAAGAAAGAGCCTGAGTCTCAATTGGCGGCAACAAGCAAGAAGGGTGCTCTTCGAAGTGGTGCTTCATCTTAG 615 0.4943 MDPSSTKPRTSLGNLVWFFPQLLLFFNPAEEEEHAAAAMVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPAKSAKFILDLLKNAESNAEVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQLAATSKKGALRSGASS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1861 204 Gene3D Ribosomal protein L22/L17 144 203 IPR036394 GO:0003735|GO:0005840|GO:0006412
Aed7g1861 204 Gene3D Ribosomal protein L22/L17 39 143 IPR036394 GO:0003735|GO:0005840|GO:0006412
Aed7g1861 204 SUPERFAMILY Ribosomal protein L22 39 177 IPR036394 GO:0003735|GO:0005840|GO:0006412
Aed7g1861 204 Pfam Ribosomal protein L22p/L17e 55 175 IPR001063 GO:0003735|GO:0005840|GO:0006412
Aed7g1861 204 PANTHER 60S RIBOSOMAL PROTEIN L17 30 197 IPR005721 GO:0003735|GO:0006412|GO:0015934
Aed7g1861 204 MobiDBLite consensus disorder prediction 177 204 - -
Aed7g1861 204 ProSitePatterns Ribosomal protein L22 signature. 150 174 IPR018260 GO:0003735|GO:0005840|GO:0006412
Aed7g1861 204 TIGRFAM uL22_arch_euk: ribosomal protein uL22 42 177 IPR005721 GO:0003735|GO:0006412|GO:0015934
Aed7g1861 204 CDD Ribosomal_L22 53 174 IPR001063 GO:0003735|GO:0005840|GO:0006412
Aed7g1861 204 PANTHER BNAA09G27910D PROTEIN 30 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1861 Aed-Chr7 21828869 21831153 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1861 39 197 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 83.908 2.29e-104 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1861 K02880 - gmx:100800781 302.753