LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed7g1861	ATGGACCCATCTTCTACCAAACCTCGAACTTCATTGGGTAACCTAGTTTGGTTCTTCCCTCAGCTGTTGCTCTTCTTCAACCCTGCGGAAGAGGAAGAACACGCCGCCGCAGCCATGGTGAAGTACTCCAGAGAACCCGACAATCCCACCAAGTCCTGCAAGGCCAGAGGCGCTGACCTCAGGGTTCATTTTAAGAACACAAGGGAGACAGCGTTTGCCATCAGGAAGTTGCCCTTGGTTAAAGCTAAAAGATACTTAGAGGATGTTTTGGCCCACAAACAGGCCATTCCCTTCCGACGCTTCTGTCGTGGAGTTGGGAGGACAGCCCAAGCCAAGAGCAGACACTCCAATGGGCAAGGACGCTGGCCTGCCAAATCAGCTAAATTCATTCTAGATTTGCTTAAAAATGCTGAGAGTAATGCCGAAGTTAATCAAGCACAGAAGCAAAGACGCCGTACCTACCGAGCTCATGGAAGAATCAACCCTTACATGTCATCTCCATGCCACATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTGAAGAAAGAGCCTGAGTCTCAATTGGCGGCAACAAGCAAGAAGGGTGCTCTTCGAAGTGGTGCTTCATCTTAG	615	0.4943	MDPSSTKPRTSLGNLVWFFPQLLLFFNPAEEEEHAAAAMVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKSRHSNGQGRWPAKSAKFILDLLKNAESNAEVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPESQLAATSKKGALRSGASS	204

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed7g1861	204	Gene3D	Ribosomal protein L22/L17	144	203	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Aed7g1861	204	Gene3D	Ribosomal protein L22/L17	39	143	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Aed7g1861	204	SUPERFAMILY	Ribosomal protein L22	39	177	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Aed7g1861	204	Pfam	Ribosomal protein L22p/L17e	55	175	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Aed7g1861	204	PANTHER	60S RIBOSOMAL PROTEIN L17	30	197	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Aed7g1861	204	MobiDBLite	consensus disorder prediction	177	204	-	-
	Aed7g1861	204	ProSitePatterns	Ribosomal protein L22 signature.	150	174	IPR018260	GO:0003735\|GO:0005840\|GO:0006412
	Aed7g1861	204	TIGRFAM	uL22_arch_euk: ribosomal protein uL22	42	177	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Aed7g1861	204	CDD	Ribosomal_L22	53	174	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Aed7g1861	204	PANTHER	BNAA09G27910D PROTEIN	30	197	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed7g1861	Aed-Chr7	21828869	21831153	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed7g1861	39	197	Cytoplasmic Ribosomal Protein Gene Family	AT1G27400	83.908	2.29e-104	296

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed7g1861	K02880		-	gmx:100800781	302.753

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