Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1844 ATGGAGTGGAATGCAAAATCTCTGGGGCAATGGGACTGGGAGCACTTATTCTTCTTCAATACAAAAGCAACAGAAAATCCAAGTCCAAGGTTACAAGCAACTGATTGTAGCGGTGAAGCAGATCGAGAAATCAATGTCGGACTGTTGTATCCATCAGGCGGTAGTGCTTGTTCGGGCTCTGAACTAATACCTGCGGCTTCATCAAGGAGCTCAAAATCAGCTTCCAACAATTCATCATCAAATGGGGATAGCAAGGCATCTATATTGACTCAGGATGATTCCACAGGGAAGAAAGAATTGTGCAATGGAGAGCCAATTGAAACTTCTCCAGCAGCAGTGCCCTCTCCTGTCTCTGGTGAACCATTGCTCACTCTAAAGCTGGGAAAACGATTGTACTTTGAGGATGTTTGCACAGGAAGTGATTCCAAGAAACCATCTTCCTTTGAAGTTCCCGTTTCATCAGAAAAGAAATATAAAACCACAAGTCAGAATTTACAGCATCCAAGCTGCCAAGTGGAAGGCTGTGGCCTTGACCTCTCATCTGCTAAGGATTACCATCGCAAACACAGAGTTTGTGAAGCTCATTCCAAATCCCCTAAGGTTGTTATAGCCGGTTTGGAACGACGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGAGAAAAAAAGAAGCTGCAGACGACGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCTGCCTGACTCAATCCAATTAAATCCATCAGCTTTGTCTTCATCACCCTATGATGGGAGGCAAATAATGAGTTCATTTGCATTTTCAAGGAGTGCTACAAATTTAGCTTGGCAAGATATGCACAACAGCAAGCTCCCCCAGACAAAAGAATTCCTACCGAAGCCTGCGAAAGACTTCAATAAGATACCAAGTATTGTCTCCATGCTTTCTGAAGAATCCAATGGCCTTCTAACATCTAGAAGCATAGCAACCAAGAGTATTGTTCCAGGTGGTATAGAAGATCCAAATGCTACAACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCTTCATGGGGTTCGTATGAGACCAAGTCCCTTTCTCACCCAATGGCTCAACACCGCTTGCCACTTCCATCTTCATCAGAGTATTGGCACACTGATCATCAACAACAAGCACCCCATTCCAACAGCATGTGCATCTCATACTCGGATTGTGATAGCAGCAATCGCTTTCAAGACTTTCAGCTGTTGAGCTCACCCTATGAATCAGGTTTTCATTGCAACCAACTGGATTAA 1299 0.4411 MEWNAKSLGQWDWEHLFFFNTKATENPSPRLQATDCSGEADREINVGLLYPSGGSACSGSELIPAASSRSSKSASNNSSSNGDSKASILTQDDSTGKKELCNGEPIETSPAAVPSPVSGEPLLTLKLGKRLYFEDVCTGSDSKKPSSFEVPVSSEKKYKTTSQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCEAHSKSPKVVIAGLERRFCQQCSRFHALSEFDEKKRSCRRRLSDHNARRRKPLPDSIQLNPSALSSSPYDGRQIMSSFAFSRSATNLAWQDMHNSKLPQTKEFLPKPAKDFNKIPSIVSMLSEESNGLLTSRSIATKSIVPGGIEDPNATTQDVNRALSLLSTNSSWGSYETKSLSHPMAQHRLPLPSSSEYWHTDHQQQAPHSNSMCISYSDCDSSNRFQDFQLLSSPYESGFHCNQLD 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1844 432 SUPERFAMILY SBT domain 168 249 IPR036893 GO:0003677|GO:0005634
Aed7g1844 432 Gene3D - 160 231 IPR036893 GO:0003677|GO:0005634
Aed7g1844 432 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 23 431 - -
Aed7g1844 432 MobiDBLite consensus disorder prediction 140 161 - -
Aed7g1844 432 ProSiteProfiles Zinc finger SBP-type profile. 167 244 IPR004333 GO:0003677
Aed7g1844 432 MobiDBLite consensus disorder prediction 65 96 - -
Aed7g1844 432 MobiDBLite consensus disorder prediction 139 161 - -
Aed7g1844 432 Pfam SBP domain 170 243 IPR004333 GO:0003677
Aed7g1844 432 MobiDBLite consensus disorder prediction 230 257 - -
Aed7g1844 432 MobiDBLite consensus disorder prediction 65 119 - -
Aed7g1844 432 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 431 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1844 Aed-Chr7 21742212 21749149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1844 1 388 SBP-box Gene Family AT5G43270 39.394 2.15e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed7g1844 SBP 5.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1844 - - gmx:100781289 718.383