Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1836 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCGGCTCAAGCATGCTGAAATCGCTGGAGAGGTACCAGAAATGCAACTATGGAGCGCCTGAGGCCAATGTGACAACAAAGGAAGCCTTGGTATTGGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCACGTTATGAAGCTCTACAACGTTCTCAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAGGAGCTTGAGTCACTTGAAAGGCAGCTAGATTCGTCTTTGAAGCAAATCAGATCAACAAGGACCCAATTCATGCTGGATCAGCTTTCTGATCTACAACGTAAGATATCATCCAGATCCAGTATCAGTGGTGGTGACAGAAGGCCCAAGCATGAATAA 534 0.4551 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGSSMLKSLERYQKCNYGAPEANVTTKEALVLELSSQQEYLRLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKISSRSSISGGDRRPKHE 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1836 177 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 160 - -
Aed7g1836 177 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aed7g1836 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed7g1836 177 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 160 - -
Aed7g1836 177 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Aed7g1836 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed7g1836 177 Coils Coil 128 148 - -
Aed7g1836 177 ProSiteProfiles K-box domain profile. 91 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed7g1836 177 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Aed7g1836 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed7g1836 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed7g1836 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed7g1836 177 Pfam K-box region 94 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed7g1836 177 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Aed7g1836 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1836 Aed-Chr7 21692368 21696165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1836 1 162 MADS-box Gene Family AT1G24260 87.037 1.73e-101 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed7g1836 K-box 8.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1836 - - gmx:100778931 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1652 5 20580399 20587373 Aed7g1836 7 21692368 21696165 PCT