Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1806 ATGGCGTTCTGTAACAAGGTTGGAAATGTCTTGAGGCAGGGTGCTGCTCGCAGCACACAAGCACCTGTTGCATCCATGCTTAATTACATCCGCTGCATGTCTTCAAGCAAGCTTTTCATTGGAGGGCTTTCATATGGAGTTGATGACCGGTCTCTTAGGGATGCATTTTCTGGCTTTGGAGATGTGGTTGAGGCAAGAGTTATAACTGATAGAGACACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCTGATGACGAGTCTGCAACTTCGGCACTCTCTGCAATGGATGGCCAGGATCTAGATGGGCGAAGCATTCGAGTATCCTATGCAAATGATAGACCTTCTGGACCTCGATCTGGTGGCGCTGGGGGTTATGCTCCTCGTGTTGGTGGTTGGTGA 405 0.4864 MAFCNKVGNVLRQGAARSTQAPVASMLNYIRCMSSSKLFIGGLSYGVDDRSLRDAFSGFGDVVEARVITDRDTGRSRGFGFVNFSDDESATSALSAMDGQDLDGRSIRVSYANDRPSGPRSGGAGGYAPRVGGW 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1806 134 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Aed7g1806 134 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 127 - -
Aed7g1806 134 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Aed7g1806 134 SMART rrm1_1 37 110 IPR000504 GO:0003723
Aed7g1806 134 MobiDBLite consensus disorder prediction 111 134 - -
Aed7g1806 134 Gene3D - 28 134 IPR012677 -
Aed7g1806 134 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 127 - -
Aed7g1806 134 SUPERFAMILY RNA-binding domain, RBD 33 130 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1806 Aed-Chr7 21485028 21488028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1806 1 123 Eukaryotic Initiation Factors Gene Family AT4G34110 35.772 1.01e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1806 - - gmx:100527220 215.698