Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1797 ATGCGAACTTCATGGGCTGATTTGGCTGCCAATTCGGCGTCTGAAAATGCGGGAACCTCTAACTCCACCACAGCTCCTTCGCGCCCCGTTTACGTGCCTCCGCATCTGAGAAACCGTGGAGGAGCATCAGAATCCCCTGCTCCACCACCATCCAATAATAATTACAATAATAATAATAATAATAACAACAATAATAATAATGTAGGATCACGGTGGGGTGTTCCGCCGCCTAGAAGCGGTGGTGGTGGTGGTGGTAGTTGGGATCGTCGTGAACGCGAAGTGAATCCATTCGAGGACGCAGCAGCAGCAGCAGACGAGGAAGCTGTTGGCGAGGCGCAGGAAAACACGGGGATTAACTTCGATGCGTACGAGGACATTCCGGTGGAGACGAGCGGCGAAAACGTGCCGCCGCCTGTGCATACTTTTGCGGAGATTGACTTGGGAGACGCGCTTAATCAGAACATCAGACGCTGCAAATACGTGAAGCCGACGCCGGTTCAGCGGCATACCATACCCATATCCCTCGCCGGCCGGGATTTGATGGCTTGCGCGCAGACCGGCTCTGGAAAGACTGCCGCATTCTGTTTCCCAATCATCAGTGGGATTATGAAAGCCCAATCCTTCCACCAGAGGCCGCCTCCCCGCGGCCTCCGCACAGTCTTTCCACTTGCCCTTGTTCTCTCACCAACTAGAGAGCTATCCATGCAAATACACGACGAGGCGAAGAAGTTTTCGTACCAGACAGGAGTCAGGGTCGTTGTTGCTTACGGTGGAGCTCCGATCAACCAGCAGAGACTAGCCTCTGATTTCCTTTCACATTATATTTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTGATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGATCTTCTTCATGCACAGAGGGCAAACGGTGTACAAGTAAAGGAAAGAGAATTGGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATCTTGGTTGCAACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGATTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGAATTGGAAGGACCGGCCGTGCAGGGAAGAAAGGGCTTGCAACTGCTTTCTTTAATGACAACAATGCATCCCTCGCAAGGGCTTTAGCTGATCTGATGCAAGAAGCAAATCAAGAAGTTCCGGATTGGCTCTCACGGTATGCTGCTCGCTCTTCCTTTAGTGGTGGAAGGAACCGTCGATCAGGAGGAGGCCGTTTTGGTGGCCGTGACTTTCGAAGAGATGGTCCTTTTAGTCGGGGTGGTTCTGATTACTACAATGCAGGAAACAACAATAGCAATGGGTATGTCACTTCTGGTGGGCACGGTGGAGGAGGATACGGTCCTGGGGTAACAAGTGCATGGGACTGA 1455 0.5052 MRTSWADLAANSASENAGTSNSTTAPSRPVYVPPHLRNRGGASESPAPPPSNNNYNNNNNNNNNNNNVGSRWGVPPPRSGGGGGGSWDRREREVNPFEDAAAAADEEAVGEAQENTGINFDAYEDIPVETSGENVPPPVHTFAEIDLGDALNQNIRRCKYVKPTPVQRHTIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMKAQSFHQRPPPRGLRTVFPLALVLSPTRELSMQIHDEAKKFSYQTGVRVVVAYGGAPINQQRLASDFLSHYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQVKERELALRSFKSGNTPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARALADLMQEANQEVPDWLSRYAARSSFSGGRNRRSGGGRFGGRDFRRDGPFSRGGSDYYNAGNNNSNGYVTSGGHGGGGYGPGVTSAWD 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1797 484 Gene3D - 309 423 IPR027417 -
Aed7g1797 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 392 IPR027417 -
Aed7g1797 484 SMART ultradead3 159 416 IPR014001 -
Aed7g1797 484 Pfam Helicase conserved C-terminal domain 309 378 IPR001650 -
Aed7g1797 484 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 229 417 IPR001650 -
Aed7g1797 484 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 359 IPR014001 -
Aed7g1797 484 MobiDBLite consensus disorder prediction 422 446 - -
Aed7g1797 484 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 49 264 - -
Aed7g1797 484 MobiDBLite consensus disorder prediction 1 28 - -
Aed7g1797 484 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 140 168 IPR014014 GO:0003724
Aed7g1797 484 MobiDBLite consensus disorder prediction 45 72 - -
Aed7g1797 484 SMART helicmild6 294 378 IPR001650 -
Aed7g1797 484 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 49 264 - -
Aed7g1797 484 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 320 454 - -
Aed7g1797 484 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 264 316 - -
Aed7g1797 484 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 320 454 - -
Aed7g1797 484 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 264 316 - -
Aed7g1797 484 CDD SF2_C_DEAD 289 387 - -
Aed7g1797 484 MobiDBLite consensus disorder prediction 1 90 - -
Aed7g1797 484 Gene3D - 89 308 IPR027417 -
Aed7g1797 484 MobiDBLite consensus disorder prediction 432 446 - -
Aed7g1797 484 Pfam DEAD/DEAH box helicase 164 286 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1797 Aed-Chr7 21411623 21417147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1797 320 410 Eukaryotic Initiation Factors Gene Family AT3G19760 41.758 1.29e-18 85.9