Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1769 ATGGCTGATCCTCAGAAAACTGCTCCTGTACACGAGAGAGATATCGAGCAGGACGAGTCTCTACTCTTGTGGTACTCTGGCAAGGAAGAGAAACAGATTAAGCTCAGTACGGTTTCAAGGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCACGGCCTGAAAAGGAATATCAGTCATTTTCTCTTATATACAATGACAGGTCATTGGATTTGATATGCAAGGACAAAGAAGAAGTTGAAATCTGGTATGTTGGTCTTAAGGCATTAGTTACTCGAGGTAACAACCGCAAGTGGAGATTTGAATCAAACAGTCTGTGTTCTGATAGTCCAAATTCTGGCACACAAAGATCCTCTCCGTCAATTGCACTATTTTCTGACCCTGGAGATGCTGGTGGAGGTGCTTTTGATGTGCAAAATAGATGGGTAAAGGCTTTCTCTGAAATAGTTTCTTACACTGCAGCTAGCAAGAGTTCCAGTCAAGTTGAATCAACTGTAAATTCCTCTTTATCCTCTGGCTCTGTGGATAACTCAAGCAATCGAAATTCTGCATCTGATGCATTTCGAGTTAGTTTATCTAGTGCTGTAAGTTCCTCCAGCCAGGGTTCTTACCATGAAGATTTTGATTCCCTAGGTGATGTTTTTATTTGGGGAGAAGGTATTGGCGATGGAATTCTTGGCGGTGGTGTACATAGAGTTGGAGCCTTATCTAGATATGAGATAGATGCGTTCCTTCCCAAGGCATTGGAATCAAAGTTAGTTCTAGATGTTCATAGTATTGGTTGTGGCTACAGACATGCTGTTCTAGTTACCAAGCAGGGAGAGATATATAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTAGAAATGGATGTTTTTCACCCTAAGCTCATTGACACTCTTGGTGGCATGAATATTGAGTTAGTAGCGTGTGGAGAATATCATACTTGCGCTGTTACTTATTCTGGGGATCTTTATACTTGGGGTGATGGTACTCACAGTTCTGGCATGATTGGGCATAGAAATGAAGTCAGTCACTGGATTCCTAAGAAAGTAAGTGGTAACTTGGAGGGTTTACGTGTATCATATGTGTCCTGTGGACCTTGGCACACAGCTATTGTTACATCAGCTGGGCAGTTGTTCACATTTGGTGATGGAACTTTTGGTACCTTAGGGCATGGAGATCATAGTAGCTCAAATATTCCTCGGGAAGTAGAGACTTTGAAAGGGTTGAGAACAACCAGGGTTGCCTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGATAAATGAATCTGTGGAATCTTCTACATGCTCATCTAGTGGAAGACTGTTCACCTGGGGTGATGGAGATAAAAGCCAACTTGGACATGCTGATAGGGAACCTAGACTAGTTCCCGAGTGTGTAAATGCATTGAGTACCGAAAACATTTGCCGAGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACATCAGGACATGTATATACAACGGGAAGTACATCTTATGGACAACTTGGCTGTCCTGCATCTGATGGAAAAGTCCCTACACGTGTTGAAGATAAAATTGCTGACAGTTTTGTAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCCTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGCCATGGAGACAATGATCACAGGAATAAACCCACACTTGTTGAATTCTTAAAAGATAAACAAGTGAAAAGTGTTTTTTGTGGTTCAAACTTTACTGCTGTTGTATGTCTTCATAAATGGATACCAAGTGTTGATCATTCTACGTGTTTTGGATGTCACAATCCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTGTTTTGCAAATCGTGCACCGGTAAGAAATCTATAAAAGCTTCCCTTGCTCCCAATTCCAACAAGCAGTATCGAGTCTGTGATGACTGTTATCTTAAACTTAAGAAATCTTCTGAATCAGTACCCTTGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCAAAACAATAGAACCACTAAAATACAGGGAACACTATTAAGGCTTGCATCTTTTGGTTCTATTCTTCAAACAGAAAGTAGTCAATCAAAGATTCCAGATTCACAAGATAGCCATATTTTCCCAGCTTTAAATGGAAAATTACATATGAGGGGTTTTGCTCCTTCAAAATCATCAAATTCTCTTTCTGTGGATTCCAAGAAACACCTTTCAGTTTTTGAGCCTGTTGCAAGAATATCTTGTCAATCAACATCGCCAGTTTCATCAAAGTCAAGTCCAAGACAATCTTATGAAGATATCAATGACAATTTAAAGCACAGAAATGATATTTTAAGTCAAGAAGTTATGAGTTTAAGGACACAGGTTGAAGACCTTACTTGCAAGTCAAAAAGTTTAGAAAATGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGACTGTAGTAGCTACAGATGAAGCTGGAAAGTGTAAATCAGCAAAAGAGGTCATAAAGTCATTGACTGCACAGTTGAAGGAAATGGTGGAAAGACTGCCAGAAGGACATAATACTAACTCCAGTAAAGAGCCCTGTGCTGAAACCACTAATAGTATTCTACATCATTCCTTAGATGAGAGCCATATAAGAAACACCCTCATTGCCAAAAATGAAGGCAGCAGCAATGTAGCACATCAGATATTACCTAATGGTGCCAAAACACAAAGTGGGAAGGCAGAGTGGGTAGTGCAAGATGAACCAGGTGTGTACATAAGTTTGTCCTCACAGCCAGGTGGTATTGAGCTTAAGCGTGTTCGCTTCAGTCGAAGGCATTTCACAGAAGAACAAGCTGAAAAGTGGTGGGCTGAAAATGGAACCAAAATATTGGAGCGGCACAATATAGTTGCTTTATAG 2955 0.4095 MADPQKTAPVHERDIEQDESLLLWYSGKEEKQIKLSTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKEEVEIWYVGLKALVTRGNNRKWRFESNSLCSDSPNSGTQRSSPSIALFSDPGDAGGGAFDVQNRWVKAFSEIVSYTAASKSSSQVESTVNSSLSSGSVDNSSNRNSASDAFRVSLSSAVSSSSQGSYHEDFDSLGDVFIWGEGIGDGILGGGVHRVGALSRYEIDAFLPKALESKLVLDVHSIGCGYRHAVLVTKQGEIYSWGEESGGRLGHGVEMDVFHPKLIDTLGGMNIELVACGEYHTCAVTYSGDLYTWGDGTHSSGMIGHRNEVSHWIPKKVSGNLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGTLGHGDHSSSNIPREVETLKGLRTTRVACGVWHTAAVVEVINESVESSTCSSSGRLFTWGDGDKSQLGHADREPRLVPECVNALSTENICRVACGHSLTIALTTSGHVYTTGSTSYGQLGCPASDGKVPTRVEDKIADSFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVEFLKDKQVKSVFCGSNFTAVVCLHKWIPSVDHSTCFGCHNPFNFRRKRHNCYNCGLVFCKSCTGKKSIKASLAPNSNKQYRVCDDCYLKLKKSSESVPLVQTPSLRSVSLQNNRTTKIQGTLLRLASFGSILQTESSQSKIPDSQDSHIFPALNGKLHMRGFAPSKSSNSLSVDSKKHLSVFEPVARISCQSTSPVSSKSSPRQSYEDINDNLKHRNDILSQEVMSLRTQVEDLTCKSKSLENELERTSKQLKEVTVVATDEAGKCKSAKEVIKSLTAQLKEMVERLPEGHNTNSSKEPCAETTNSILHHSLDESHIRNTLIAKNEGSSNVAHQILPNGAKTQSGKAEWVVQDEPGVYISLSSQPGGIELKRVRFSRRHFTEEQAEKWWAENGTKILERHNIVAL 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1769 984 Coils Coil 782 837 - -
Aed7g1769 984 SUPERFAMILY PH domain-like 18 93 - -
Aed7g1769 984 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 383 434 IPR000408 -
Aed7g1769 984 SMART fyve_4 600 671 IPR000306 GO:0046872
Aed7g1769 984 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 677 IPR013083 -
Aed7g1769 984 MobiDBLite consensus disorder prediction 104 126 - -
Aed7g1769 984 Gene3D - 11 100 IPR011993 -
Aed7g1769 984 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 448 499 IPR000408 -
Aed7g1769 984 Coils Coil 845 865 - -
Aed7g1769 984 ProSiteProfiles BRX domain profile. 926 980 IPR013591 -
Aed7g1769 984 Pfam Transcription factor regulating root and shoot growth via Pin3 925 979 IPR013591 -
Aed7g1769 984 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 421 431 IPR000408 -
Aed7g1769 984 Gene3D - 443 607 IPR009091 -
Aed7g1769 984 Gene3D - 141 442 IPR009091 -
Aed7g1769 984 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 16 978 - -
Aed7g1769 984 SUPERFAMILY FYVE/PHD zinc finger 604 679 IPR011011 -
Aed7g1769 984 Pfam Transcription factor BRX N-terminal domain 840 870 IPR027988 -
Aed7g1769 984 Pfam FYVE zinc finger 604 670 IPR000306 GO:0046872
Aed7g1769 984 MobiDBLite consensus disorder prediction 104 125 - -
Aed7g1769 984 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 382 IPR000408 -
Aed7g1769 984 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 552 603 IPR000408 -
Aed7g1769 984 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 262 272 IPR000408 -
Aed7g1769 984 CDD FYVE_like_SF 613 666 - -
Aed7g1769 984 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 978 - -
Aed7g1769 984 Pfam Regulator of chromosome condensation (RCC1) repeat 499 548 IPR000408 -
Aed7g1769 984 Pfam Regulator of chromosome condensation (RCC1) repeat 276 324 IPR000408 -
Aed7g1769 984 Pfam Regulator of chromosome condensation (RCC1) repeat 553 600 IPR000408 -
Aed7g1769 984 Pfam Regulator of chromosome condensation (RCC1) repeat 447 496 IPR000408 -
Aed7g1769 984 Pfam Regulator of chromosome condensation (RCC1) repeat 327 378 IPR000408 -
Aed7g1769 984 Pfam Regulator of chromosome condensation (RCC1) repeat 383 431 IPR000408 -
Aed7g1769 984 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 276 327 IPR000408 -
Aed7g1769 984 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 500 551 IPR000408 -
Aed7g1769 984 SUPERFAMILY RCC1/BLIP-II 212 605 IPR009091 -
Aed7g1769 984 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 214 275 IPR000408 -
Aed7g1769 984 PRINTS Chromosome condensation regulator RCC1 signature 489 507 IPR000408 -
Aed7g1769 984 PRINTS Chromosome condensation regulator RCC1 signature 328 344 IPR000408 -
Aed7g1769 984 PRINTS Chromosome condensation regulator RCC1 signature 369 385 IPR000408 -
Aed7g1769 984 PRINTS Chromosome condensation regulator RCC1 signature 278 294 IPR000408 -
Aed7g1769 984 PRINTS Chromosome condensation regulator RCC1 signature 547 568 IPR000408 -
Aed7g1769 984 PRINTS Chromosome condensation regulator RCC1 signature 385 399 IPR000408 -
Aed7g1769 984 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 608 670 IPR017455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1769 Aed-Chr7 21166711 21177025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1769 842 981 Major Intrinsic Protein MIP AT1G31880 32.203 4.01e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1769 - - pvu:PHAVU_003G066900g 1393.64