Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1749 ATGGCGAATTGTCTGAGTTATTTTGTTTTGCTTTCTTTGGGAATCTTAATTCCTACCCTGAATGCCAATACCCTCGAGAAAGAGGAGTATTGGGCTAGCCATGCCAATGAGTTTGACTCATATTGGAAGGAAAGGGCAAAAGTCGCTAAAGCTAACAGCGAGGCAGCATATTTCCCTGATCCCCATGCACTCTCCAGCAACTTCAGTTCCGGTGTTAACGAGATCCTAGCTGGGAAGAAGGATAAAAGAAGGAACTTGAGAGGGAGAAATCATGCAGGAGATGAATGCATGGCCACCAACCCCATCGACAGGTGTTGGAGGTGTGACCCTAACTGGGCCGACAACCGCCAGAAGCTTGCAGATTGCGTCCAGGGCTTTGGCCGGAACACAGTCGGAGGCAAAGGCGGCCCAATCTACGTGGTCACAGACCCTTCAGATGACGAGTTGGTAAACTTAAAACCCGGAACTCTCAGACACGCTGTGACCCGCGACGGCCCACTCTGGATCATCTTTGCCCACGACATGATCATCACTCTCCAACAAGAACTCATCGTAAGCAGCAACAAGACCATTGATGGAAGAGGCGCTGAGGTTTACATTGCCTACGGCGCGGGCCTCATGTTGCAGTATGTGAGCAACATCATCATCCACGGGATTAAGGTCTTCGACATCCAGGTCCGTGGGGGTGGCATAATCAGAGACTCCGAGAACCATTATGGCTTTAGAACCCAGAGTGATGGTGATGGCATTTCCCTCTTTGGTGCTAGCAATGTCTGGATTGACCATGTTTCCATGAGAAACTGCTCTGATGGACTCATTGATGCCATCATGGCATCCACTGCTATTACCATCTCCAACGGCCATTACACTGACCACAATGAGTGCTTTTTGTTTGGTGCCACTGACGATCACTTTGAAGATAAGGTGATGCAAATCACTCTTGCATTCAACCACTTTGGCAAGAGATTAATTCAAAGGATGCCGAGAATCAGATATGGTTTCGTCCACACGGTTAACAATGACTACACTCATTGGGAAATGTATGCCATAGGTGGTAGCCAGAATCCCACAATCATTAGTGAGGGCAACCGATTCATTGGCTCAGACCTCCGATTCTCTAAAGAGATTACAAAGAGAGAATACACACCAGAGAGCGAGTGGAAAAACTGGCAGTGGAAATCAATCAACGACATATACATGAACGGAGCATTTTTTATAGAGTCTGGGCCTGATATGGTTCAAAGACCATTCTCAAGACAAGACATGATCACAGCAAAGCCAGCGAGTTACGTGGGAAGGCTCACACGCTACGCTGGTAGCCTTAGGTGCAGAGTGGGTCTCCCTTGTTAA 1350 0.48 MANCLSYFVLLSLGILIPTLNANTLEKEEYWASHANEFDSYWKERAKVAKANSEAAYFPDPHALSSNFSSGVNEILAGKKDKRRNLRGRNHAGDECMATNPIDRCWRCDPNWADNRQKLADCVQGFGRNTVGGKGGPIYVVTDPSDDELVNLKPGTLRHAVTRDGPLWIIFAHDMIITLQQELIVSSNKTIDGRGAEVYIAYGAGLMLQYVSNIIIHGIKVFDIQVRGGGIIRDSENHYGFRTQSDGDGISLFGASNVWIDHVSMRNCSDGLIDAIMASTAITISNGHYTDHNECFLFGATDDHFEDKVMQITLAFNHFGKRLIQRMPRIRYGFVHTVNNDYTHWEMYAIGGSQNPTIISEGNRFIGSDLRFSKEITKREYTPESEWKNWQWKSINDIYMNGAFFIESGPDMVQRPFSRQDMITAKPASYVGRLTRYAGSLRCRVGLPC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1749 449 PANTHER PECTATE LYASE 7 449 - -
Aed7g1749 449 SUPERFAMILY Pectin lyase-like 100 440 IPR011050 -
Aed7g1749 449 Pfam Pectate lyase 182 365 IPR002022 -
Aed7g1749 449 PANTHER PECTATE LYASE 18-RELATED 7 449 IPR045032 GO:0030570
Aed7g1749 449 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Aed7g1749 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Aed7g1749 449 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Aed7g1749 449 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Aed7g1749 449 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Aed7g1749 449 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Aed7g1749 449 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Aed7g1749 449 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Aed7g1749 449 Gene3D - 99 442 IPR012334 -
Aed7g1749 449 Pfam Pectate lyase, N terminus 36 86 IPR007524 GO:0030570
Aed7g1749 449 SMART amb_all 174 371 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1749 Aed-Chr7 20888652 20890526 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1749 8 449 Polysaccharide Lyase AT1G14420 56.769 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1749 K01728 - gmx:100798579 749.969