Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1717 ATGGATCCGATGATGAACGAGGGTTCCTTTGCGAATAATGCGAGCGGCAATACGGCGCCGTTTAGCTTGGCGGAGATCTGGCAGTTCCCGCACGCGATTAGCGGCGCCGGGGGATTGGGCCTCAGAAGTCCGCAGTTCGGTCACAGCCCGGAGGGGCAATTTGGGGATTTCGCCGCCGGCCCGAACCATCACGGGCTTGGGCCCAGTAGCGCCAGAAAGCGGCGTGACTCCGAGGACGATTCCGCTAAGGCCGTGTCCACCAGCAATGCCGTGGCTCGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATCATTAATTATATCCAATCACTTCAGCGCCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCAAGACTTACTAACTCTAGTATTGAAGCGTTTCCTCTTAAAGATTTTGCTGGTCAGCAAGCATTTGATCCAGCTGGCATACCATTTGGTTCACAAGCTCCAAGAGAGTACAGCAGAGGTTCTTCACCAGATTGGTTACATATGCAGATAGGAGGTGGTTTCGAAAGAACAACGTAG 615 0.5024 MDPMMNEGSFANNASGNTAPFSLAEIWQFPHAISGAGGLGLRSPQFGHSPEGQFGDFAAGPNHHGLGPSSARKRRDSEDDSAKAVSTSNAVARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLTNSSIEAFPLKDFAGQQAFDPAGIPFGSQAPREYSRGSSPDWLHMQIGGGFERTT 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1717 204 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 4 83 IPR024097 GO:0006355
Aed7g1717 204 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 92 204 IPR024097 GO:0006355
Aed7g1717 204 SMART finulus 89 137 IPR011598 GO:0046983
Aed7g1717 204 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 131 IPR011598 GO:0046983
Aed7g1717 204 Coils Coil 128 148 - -
Aed7g1717 204 Gene3D - 91 155 IPR036638 GO:0046983
Aed7g1717 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 148 IPR036638 GO:0046983
Aed7g1717 204 Pfam Helix-loop-helix DNA-binding domain 93 132 IPR011598 GO:0046983
Aed7g1717 204 PANTHER BNAC05G07950D PROTEIN 4 83 - -
Aed7g1717 204 PANTHER BNAC05G07950D PROTEIN 92 204 - -
Aed7g1717 204 MobiDBLite consensus disorder prediction 44 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1717 Aed-Chr7 20589086 20592265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1717 92 204 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 62.281 4.04e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed7g1717 HLH 5.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1717 - - gmx:100784478 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0274 11 2283860 2288003 Aed7g1717 7 20589086 20592265 PCT