Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1709 ATTTCACTGCTGAAAGGTTTGATCACGTTGTATCACATCCCCTTAATAAAAAGAAAGCATTTGCAGCTTCATTTGGTTAGTAGAAATTTATGTGTGTCTTGTCTTTTGTTCATTTGTAGAATTAATGTGCCGAGTCTTAGGGAAAGAGTGAAGAGGCTATTTAAAGGACATGAAGATCTACTTGTGGGGCTTAATTGCTTCCTACCAAAGGCATATGAAATCACACTTCCATTGGAAGATGAACAAACATCACAGACTGAAATAGGGTCAATCAATAGTAGAGACAAACCCGATGTAAGTAGTGAAGATGCCATCCCATTTGTCAAGAAAGTGAGGGTTACATTTTTCTGTGAAAACGAGGCAAAGTATGTACACTTTCTGAACATCGTCAATGATTTCAGGACTCAAAGGATTGAGCTGGAGGATGTTGCGGAAAAACTGAAGGAGCTGTTTATTGGACACAACGATTTAATTGTGGGATTCAATGTCTTCTTGCCAAAGGAATGTGAAATCACTCTTCCATTGGAGGATGAACAACCACCACCACAGAATGAGCCTGTTGAACTTGCAGAAGACGTAACTTTAATGGACAAGTTAAAGGTAAAACATTGTTTTGTTACATTTAATTCATTTGTGTATGATTTCTAA 648 0.375 ISLLKGLITLYHIPLIKRKHLQLHLVSRNLCVSCLLFICRINVPSLRERVKRLFKGHEDLLVGLNCFLPKAYEITLPLEDEQTSQTEIGSINSRDKPDVSSEDAIPFVKKVRVTFFCENEAKYVHFLNIVNDFRTQRIELEDVAEKLKELFIGHNDLIVGFNVFLPKECEITLPLEDEQPPPQNEPVELAEDVTLMDKLKVKHCFVTFNSFVYDF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1709 215 Pfam Paired amphipathic helix repeat 122 165 IPR003822 GO:0006355
Aed7g1709 215 Gene3D Paired amphipathic helix 103 166 IPR036600 GO:0006355
Aed7g1709 215 PANTHER SIN3B-RELATED 96 202 IPR039774 GO:0003714
Aed7g1709 215 SUPERFAMILY PAH2 domain 98 168 IPR036600 GO:0006355
Aed7g1709 215 SUPERFAMILY PAH2 domain 40 70 IPR036600 GO:0006355
Aed7g1709 215 Coils Coil 130 150 - -
Aed7g1709 215 Gene3D Paired amphipathic helix 21 71 IPR036600 GO:0006355
Aed7g1709 215 ProSiteProfiles PAH domain profile. 96 168 IPR003822 GO:0006355
Aed7g1709 215 PANTHER PROTEIN, PUTATIVE-RELATED 96 202 - -
Aed7g1709 215 PANTHER PROTEIN, PUTATIVE-RELATED 40 140 - -
Aed7g1709 215 PANTHER SIN3B-RELATED 40 140 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1709 Aed-Chr7 20510541 20511483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1709 41 81 WRKY Transcription Factor Family AT4G12020 46.341 8.51e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed7g1709 PAH 5.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1709 K11644 - cam:101488742 117.472