Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1708 ATGAGTACCGGTGAACAGAAACCATCGATGCAAGATGCCTCCGCATATCTCAACAAAGTGAAGGATACCTTTCAACATGAGAAGGAAAAGTATGAAGACTTGATAGATTTGTTGAATGATTTCAAAGCTAAAAGAATTGCTGTGCTGAGTGTCAGGGAAAGAGTGATGGAGCTACTCAAAGGACATAGAGATCTACTTGTTGGGTTTAATTTCTTCTTGCCAAAGGCATATGAAATCATATTGGAGGATGAAGAGCCACCACAGATTGAAACAGAGACAATCAATGGTACAGATGGACCCAATAGAGCAGATGGCCTTGCATTTGCCCGTAAAGTGAGGCTTGCATTTTTACGTCAAGATGGGAAATTTTCTCAATTTATGGCCACCATGAAAGATTTCAGTGAGAAAAGAAATTTATTTGTGTCTTCTCTTCTTCTCATTTGTAGACTTGATTTGGAGACTGTCAAAGAAAGAGTGAAGAAGCTATTTAAAGGACATGACGATTTAATTGTGGCATTCAATTACTTCTTGCCAAAGGGATATGAAATCACTCTTCCATTGGAGGCTGAACAACCACCATCACCGCCAAAGGATGAGCCTGTTGAACCTGAAGGAGCAGAAGACTTAAATCTTATGGGCAGGATAAAGGTTGCTGAATGTTTGCAGGGCCATGTGGAATTTTTCCGTAACTTCACTAACCTTTTTATTGGAAGTAAAGAGGAAGAGGATGATGAAGATGAAGAGGAGAGGATGAAGAAGATCAAGCGTAGAAAGACGCAGCTCTGA 786 0.402 MSTGEQKPSMQDASAYLNKVKDTFQHEKEKYEDLIDLLNDFKAKRIAVLSVRERVMELLKGHRDLLVGFNFFLPKAYEIILEDEEPPQIETETINGTDGPNRADGLAFARKVRLAFLRQDGKFSQFMATMKDFSEKRNLFVSSLLLICRLDLETVKERVKKLFKGHDDLIVAFNYFLPKGYEITLPLEAEQPPSPPKDEPVEPEGAEDLNLMGRIKVAECLQGHVEFFRNFTNLFIGSKEEEDDEDEEERMKKIKRRKTQL 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1708 261 Pfam Paired amphipathic helix repeat 122 177 IPR003822 GO:0006355
Aed7g1708 261 Pfam Paired amphipathic helix repeat 29 73 IPR003822 GO:0006355
Aed7g1708 261 PANTHER SIN3B-RELATED 6 85 IPR039774 GO:0003714
Aed7g1708 261 PANTHER SIN3B-RELATED 103 235 IPR039774 GO:0003714
Aed7g1708 261 Gene3D Paired amphipathic helix 104 178 IPR036600 GO:0006355
Aed7g1708 261 Gene3D Paired amphipathic helix 12 74 IPR036600 GO:0006355
Aed7g1708 261 ProSiteProfiles PAH domain profile. 99 180 IPR003822 GO:0006355
Aed7g1708 261 MobiDBLite consensus disorder prediction 239 261 - -
Aed7g1708 261 SUPERFAMILY PAH2 domain 101 179 IPR036600 GO:0006355
Aed7g1708 261 SUPERFAMILY PAH2 domain 5 75 IPR036600 GO:0006355
Aed7g1708 261 ProSiteProfiles PAH domain profile. 6 76 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1708 Aed-Chr7 20501732 20504076 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1708 12 86 WRKY Transcription Factor Family AT4G12020 44.156 1.39e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed7g1708 PAH 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1708 K11644 - cam:101488742 129.413