Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1706 ATGGGGTTGGAGGGTAGGTGGTTGGGTAGTCATGTTGGTGGAGACATATTGTTGAGGTGTTTGATCAGATGTGGTAAGGTGCTTGCCCTTCGAAGGATCTTTCTATCTTTAGCCTTAACAAAACAAATGTTGCATGTTCATTTCAACGATTATACATTTCAAGACAAGGGCGAAAAGTTTGACAAATTTTTGGATGTCCTCAAAGATTACAAACTTCATAGTGTTGGGGTTTTATTAGAAAAAATGGAGGAGATTCTTAAAAACCACGAGGATCTGATTGTGGAACTTAACAAGTTTATGCCAAAGGGATATGAAATCCTACTTCAACAAAAGGGATATGTAGATATATTATAG 354 0.3701 MGLEGRWLGSHVGGDILLRCLIRCGKVLALRRIFLSLALTKQMLHVHFNDYTFQDKGEKFDKFLDVLKDYKLHSVGVLLEKMEEILKNHEDLIVELNKFMPKGYEILLQQKGYVDIL 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1706 117 Coils Coil 79 99 - -
Aed7g1706 117 ProSiteProfiles PAH domain profile. 31 103 IPR003822 GO:0006355
Aed7g1706 117 SUPERFAMILY PAH2 domain 52 102 IPR036600 GO:0006355
Aed7g1706 117 Pfam Paired amphipathic helix repeat 58 99 IPR003822 GO:0006355
Aed7g1706 117 Gene3D Paired amphipathic helix 50 101 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1706 Aed-Chr7 20476559 20479674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1706 53 108 WRKY Transcription Factor Family AT4G12020 34.483 2.30e-06 43.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed7g1706 PAH 8.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1706 K11644 - var:108321439 74.3294