Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1704 ATGAGTGAAGCTAGAAAAATGATGACTAAAAGGGATGCCATAGAATATATCAACAAAGTACGTGATACATTTCGAGACAAGAAAAAGTTTGGCAAGTTTATTAATACCGTGAAAGATTACAAACAACATAGAATTAATGTTTCGGTCCTTATTGAGAGAATGGAGGAAATTTTTAAAGACCAGAAGGATCTAATTTTGGGTTTTAACAGGTTTTTGCCAAAAGGATATGAAATCCTATTTATACCTGAGGGTGAAATGCAGTTTGAAGATGCTGTGCAATATGTGAATAAGATTAAGGCTGCTAAACTTTTTAAGGACCACCCTGATATTCTTCGTGACTTCACTAAATTTTTGCCACCCCTTCCTTAA 369 0.3415 MSEARKMMTKRDAIEYINKVRDTFRDKKKFGKFINTVKDYKQHRINVSVLIERMEEIFKDQKDLILGFNRFLPKGYEILFIPEGEMQFEDAVQYVNKIKAAKLFKDHPDILRDFTKFLPPLP 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1704 122 PANTHER SIN3B-RELATED 3 119 IPR039774 GO:0003714
Aed7g1704 122 Gene3D Paired amphipathic helix 12 73 IPR036600 GO:0006355
Aed7g1704 122 ProSiteProfiles PAH domain profile. 5 75 IPR003822 GO:0006355
Aed7g1704 122 SUPERFAMILY PAH2 domain 83 120 IPR036600 GO:0006355
Aed7g1704 122 Pfam Paired amphipathic helix repeat 30 72 IPR003822 GO:0006355
Aed7g1704 122 Pfam Paired amphipathic helix repeat 100 118 IPR003822 GO:0006355
Aed7g1704 122 SUPERFAMILY PAH2 domain 8 74 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1704 Aed-Chr7 20434582 20435507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1704 8 93 WRKY Transcription Factor Family AT4G12020 36.364 4.59e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed7g1704 PAH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1704 K11644 - var:108321439 116.316