Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1702 ATGCAAATGTCGTTCATACCTTTGTTAATTCCCTTCGGAATGAAGAGGTCCAGGGATGGTGCTAACGCGAGTTCGCAACTCAAACGGCCCAAGGTGTCTTCCAGAGAAGAACAGTCAGGACAATCACAGATGATGACTGGTGATCAGGGACTTACCAACAAATGTGCCTTGGCATTTCTCAAGGAAGTAAAGGATGTATTTCACGATAAGAGTGAAAAGTATGATGAATTTATGGAAATCATGAAGAATTTCAAGGCTCAAAGAATTAATACAAGAGGTGTTAGGGGAAGAGTGAAGGAGCTGTTTAAAGGGCACAGAGATCTAATATTGGGATTTAACACCTTCTTGCCAAGGGGATATAAAATTATACTTCCATTGGAGGAGCAACCTCCCCAAAAGAAGCCTGTTGAATTCGCAGAAGAAGCCATAAGATTCATGACCGACATTATGACTCGTTTTCAAGTAAATGACAGTGTTTATAAGTCATTTCTAAACATATTAAACATGTACAGAAAGGAAACCAAGTCTTTCACCGAGCTTAACAAGGAGGTTACTGCACTTTTCCAGGACCATCCAGATCTTCTTGAGGAGTTTACTCTTTTTTTTTCATCAGGAGTAGCCCCTAATTACTATTATAGGAGCTCTGCTATGCATGTTAAAAAGAGAGAAAGGAACATAACTCTACTTGGTGATCGTGACCTCATTGCTGACCATCCTGATCCAGAACTTGACAGGTGTTTGATGAAGGCTGATAAGGATCAGAGGAGGCGTGGTGCAAAGGAAGAGGACTGTAGAGATTCTGATCATAATGGTAGTAGGGAGCTATTATCTCACAAACAGAAATCTGGTTGCAGGGATGAAGACCCTGGTGCTGAACCATTGCATGATACTGATATATTTTTTGGCATGCATCCTATCTCATCTGCTTGTGAGGATATAAGTTCTTTGAAAAGTATATTTAGTCAGGTGTTTGGTTACCTAGAAAAAGTCAAGGAGAAGTTACAAAATCCCGAGGATTTCCAGGAATTTTTGAACTACCTATGTATCTACAGCAAGGAAATAATTACCAGACAAGAATTGCAATCATTGGTGAGCAATTTACTGGGAAAATATGAATACCTTATAGAGGGGTTTGATGAATTTTTGGCTCAATGTGAGAAGAATGGACGCATACCTACACCAATTAAGACAGAGGACAGGAATCAGGATAAGGATGATGAGATGAAAAAAAGGGATCTCAAATGCCTAGACCTAGAAAGGGACAAGTCCAATGCAACTGATAACAAGGATGTTTCAATTCCTAAGATGTCTCTCTATACCAGCAAGGATAAGTATGAAACGAATCCTATGGCTATAAGTAAGCTGGACCTTTCTAACTGTGAACAATGCACTCCTGGTTACCGTGCTCTGCCAGAAAATTATCCAATACCGCAAACTAGATGCAGAACAGAACTTGGTGCAGAGATATTGAATGATCCCTGGGTTTCTGTTCCTTCTCGCAGTGAGAATTCCTCTAACCTCAGGTTGAAAAACCAATATGAGGAGAGCATGTTTAGATGTGAAGATGATAGGTATGAACTTGATATGTTGTTAGTAGCTGTAAATGCGACAGCTAAAAGAGTTGAAGATCTCATAGAAAAGATAAATGCTAGTATAAAAGAATGCTTTCCAATTCGTATTGAGGAGCACTTAACAGCTATAAATTTTAGGTGCATTGAAGAAATATATGGTGATCATGGGCTTGAAGTAGTGGAACATCTAAAGAAGAATGCACCTTTAGTTTTGCCAATCATATTTACCCGCTTGAAGCAGAAACAGGATGAGTGGACAAGGAACCGTGCTGATTTTAATAAAGTTTGGGCTGAAGTATATGCAAAGAACTATCACAAATCACTTGATCAACGTAGTGTCTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCACTATAGAAATCAAAGAAATTAGAGAGAAGAAACAAAAAGAAAATGACGTTCTTCTTGCAGTTGGTGCTGGAAACAGACAGCCTGTTATTCCTCACCTGGAATCTGTGTATCCTGATCTGGAGATTCATGTAGATGGTCCTAAGGATACAAAAAATGTTGTGAAGGATAAGAATAATTCTGCTAAAAGTGGTACTGCAATTGCCAAGGGTAGCCATGGTGTTGGATTTACCATAATGAATCCTGAGAATTTAAACACTGATACAAATAGGAATGAGAGTGTTCTGTTAGAAGAATCAAATTCCTGCAAACAATGGCAAAGATACAGGGATAATAAGGCTGAAGAGGATAATTATCTTGATTCAGGCTGCTCTAGACATAACAATGAAACTGAAACCTTTGGCAGTAGTACACAGGGTCAAATGCATATAAATGCATCCATTCCTAATGAAATACCAAGAGCCAAAAAGCAAGATCATTCAATTGATCGGTTGGTAAATGCTAATGTTTCACTGCCCTCTGGTATAGCGCAAAGACTTACTGCTACTCCTCCAGCAACATCTGGTAATGTTTTTAGTGAGGGAGGGCTTGATTTACCTTCATTAGAGGCGACATCATCAAAATCTGTCTCACAAGGGGACGAAGTTGCTGATCATGACCCCAATGATATCCTTAGTAGAACCTTGAATGTCCCTAAACACCTAGGCCGTGTTGGGGGAGTGGGATTTGGAGTGACACAGAAGCCTAATGTCTCACTCCAACAAAGTTCACCATCTATTGCAAATGGGGAAGTGCAACAAATCAAGAAGGGCTTCGAGGACCTCAAAAAGCGAATGGTCAAGTTGGAAAAGGAAGTGCAGTTGATGAATAAGGAGCCACAGGCAGAAGGTCTGGGTGGCCTATGTGGTAGAAAGAGTTGCACACCTACAGCTACTCATAAACCAGAGGTAACTATTAAACTTTACTGA 2910 0.3986 MQMSFIPLLIPFGMKRSRDGANASSQLKRPKVSSREEQSGQSQMMTGDQGLTNKCALAFLKEVKDVFHDKSEKYDEFMEIMKNFKAQRINTRGVRGRVKELFKGHRDLILGFNTFLPRGYKIILPLEEQPPQKKPVEFAEEAIRFMTDIMTRFQVNDSVYKSFLNILNMYRKETKSFTELNKEVTALFQDHPDLLEEFTLFFSSGVAPNYYYRSSAMHVKKRERNITLLGDRDLIADHPDPELDRCLMKADKDQRRRGAKEEDCRDSDHNGSRELLSHKQKSGCRDEDPGAEPLHDTDIFFGMHPISSACEDISSLKSIFSQVFGYLEKVKEKLQNPEDFQEFLNYLCIYSKEIITRQELQSLVSNLLGKYEYLIEGFDEFLAQCEKNGRIPTPIKTEDRNQDKDDEMKKRDLKCLDLERDKSNATDNKDVSIPKMSLYTSKDKYETNPMAISKLDLSNCEQCTPGYRALPENYPIPQTRCRTELGAEILNDPWVSVPSRSENSSNLRLKNQYEESMFRCEDDRYELDMLLVAVNATAKRVEDLIEKINASIKECFPIRIEEHLTAINFRCIEEIYGDHGLEVVEHLKKNAPLVLPIIFTRLKQKQDEWTRNRADFNKVWAEVYAKNYHKSLDQRSVYFKQQDTKSLSTIEIKEIREKKQKENDVLLAVGAGNRQPVIPHLESVYPDLEIHVDGPKDTKNVVKDKNNSAKSGTAIAKGSHGVGFTIMNPENLNTDTNRNESVLLEESNSCKQWQRYRDNKAEEDNYLDSGCSRHNNETETFGSSTQGQMHINASIPNEIPRAKKQDHSIDRLVNANVSLPSGIAQRLTATPPATSGNVFSEGGLDLPSLEATSSKSVSQGDEVADHDPNDILSRTLNVPKHLGRVGGVGFGVTQKPNVSLQQSSPSIANGEVQQIKKGFEDLKKRMVKLEKEVQLMNKEPQAEGLGGLCGRKSCTPTATHKPEVTIKLY 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1702 969 PANTHER SIN3B-RELATED 34 787 IPR039774 GO:0003714
Aed7g1702 969 Gene3D Paired amphipathic helix 56 117 IPR036600 GO:0006355
Aed7g1702 969 SUPERFAMILY PAH2 domain 315 383 IPR036600 GO:0006355
Aed7g1702 969 ProSiteProfiles PAH domain profile. 134 205 IPR003822 GO:0006355
Aed7g1702 969 MobiDBLite consensus disorder prediction 252 289 - -
Aed7g1702 969 SUPERFAMILY PAH2 domain 140 203 IPR036600 GO:0006355
Aed7g1702 969 SMART hdac_interact2seq4b 459 558 IPR013194 -
Aed7g1702 969 ProSiteProfiles PAH domain profile. 316 385 IPR003822 GO:0006355
Aed7g1702 969 Gene3D Paired amphipathic helix 316 387 IPR036600 GO:0006355
Aed7g1702 969 MobiDBLite consensus disorder prediction 828 872 - -
Aed7g1702 969 Pfam Paired amphipathic helix repeat 72 116 IPR003822 GO:0006355
Aed7g1702 969 Pfam Paired amphipathic helix repeat 159 202 IPR003822 GO:0006355
Aed7g1702 969 Pfam Paired amphipathic helix repeat 339 382 IPR003822 GO:0006355
Aed7g1702 969 PANTHER SIN3A, ISOFORM G 34 787 - -
Aed7g1702 969 Pfam Sin3 family co-repressor 461 551 IPR013194 -
Aed7g1702 969 Coils Coil 912 939 - -
Aed7g1702 969 MobiDBLite consensus disorder prediction 17 48 - -
Aed7g1702 969 Gene3D Paired amphipathic helix 132 205 IPR036600 GO:0006355
Aed7g1702 969 ProSiteProfiles PAH domain profile. 49 119 IPR003822 GO:0006355
Aed7g1702 969 SUPERFAMILY PAH2 domain 51 118 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1702 Aed-Chr7 20409804 20417007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1702 50 130 WRKY Transcription Factor Family AT4G12020 53.659 2.72e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed7g1702 Sin3_corepress 1.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1702 K11644 - gmx:106799801 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g0263 11 2167199 2178888 Aed7g1702 7 20409804 20417007 PCT