Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1701 ATGAAGAGGTCAAGGGATGATGTTTACATGAGTTCACAACTCAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACCTATGATGAGTGGTGGTGGTCAGAAACTAACAACAAATGATGCCTTGGCATATCTCAAGGCGGTAAAGGACATGTTTCAAGATAAGAGGGAAAAGTATGATGACTTTCTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACATCAGGTGTCATAGCAAGAGTCAAGGAGCTGTTTAAAGGCCATAAAGATCTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGAAATTACACTTCCATTGGAGGATGAACATCCTCCCCAAAAGAAACCCGTAGAATTTGCAGAAGCCATAAATTTTGTGGGCAAGATTAAGGCTCGTTTTCAAGGCAATGACCTTGTTTATAAGTCATTTCTAGACATACTAAATATGTACAGAAGGGAAACCAAGCCTATCGATGAGGTTTACAAGGAGGTTGCTGCACTTTTCCAGGACCATGCAGATCTTCTTAGGGAGTTTACTCATTTTCTTCCTGATACTTCAGGAACAGCCTCTAATCACCATGCTTCTGCTCGAAATTCTCTCCATGATAGGAGCTCTGCTATGCCAATAATTAGGCAAATGCATGTTGAAAAGAGAGAAAGGAACATAGCTTCACATGGTGATTGTGACCTCAGTGCTGATCATCCTGATCCAGAGCTTGACAGATTTAGGGCTGATAAAGATCAGAGGAGGTATGTTGAGAAGGAAAAGGACAGTAGAGAAGATAGACAACGGGAAAGGGATGATAGATATTATGATCATGATGGTAGTAGGGAGAATTTATCTCATAAGTGGAAATCTGGTTGTAGGGCTGAAGACTCTGGTGCTGAACCATTGCATGATACTGATGAAAATTTTGGCATGCACCCTATCTCATATGCTTGTGAGGATAAAAGTTCTTTGAAAAGTATGTATAGTCCAGTGGTTGGTTACCTTGACAAAGTGAAGGAGAAATTACGAAATCCTGAGGATTACCAAGAATTTTTGAAGTGCCTAAATATCTACAGCAAGGAAATAATTGCCCGACATGAATTGCAATCATTGGTGGGCAATTTACTGGGAAAACATACAGATCTTATGGAGGGATTTGATGAATTTTTGGCTCAATGTGAGAAGAATGAAGGATTCCTTGCTGGTCTCCTGAAAAAAAGACATGGACTAAAACCAATGAAGGTAGAGGACAGGGATCGAGATCGTGATAGGGATGATGGGATGAAAGAAAGGGACCGAGAATGCCGAGAAAGGGACAAACCCAATGCAACTGCTAACAAGGATGTTTCAGTTCCTAAGATGTCTCTATATGCCAGCAAGGATAAGTATGCGGGGAAACCTATAAGTGAGCTGGATCTTTCTAACTGTGAACAATGCACTCCCAGTTACCGTCTTCTACCAAAAAATTACCCGATACCTCCAGCTAGCCAGAAAACAGAACTTGGTGTAGAGGTGTTGAATGATCACTGGGTTTCTGTTACTTCTGGCAGTGAGGACTATTCCTTTAAACACATGCGCAAAAATCAGTATGAGGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGGCAACCAAGCGTGTTGAAGAGCTCTTAGAAAAGATTAATGCTAATATAATTAAAGGAGACACTCCAATTCATATTGAGGAGCACTTAACAGCTCTAAATCTTAGGTGCATTGAACGATTATATGGTGATCATGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCATCTTTAGCTTTGCCAGTCATATTAATCCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAACTATCACAAATCACTTGATCACCGTAGTTTCTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCACTAAAGTCTTTCTGGCAGAAATCAAAGAAATCAGTGAGAACAAACGAAAAGATGATGATGTTCTTCTTGCAATTGCTGCTGGAAACAGTCAACCTATTATTCCTCACTTGGATTTTGTGTATCCTGATCCAGAGATTCATGAAGATTTGTATCAACTCATAAAATATTCCTGTGGAGAAATGTGTACATCTGAACAGTTGGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCCATGCTTGGAGTTCCTTCTAGACCCCAAGGTCCAGAGGATACAGAAGATGTTGTCAAGGCTAATAAGAATAATTCTGCCAAAAATGGCACTGCAATTGATGATGGTGACAGTAGTCCTGTAACAAATCCTAAGAATTTAAACACTAATAGAAATGGGGATGAGAACTTTCCATTAGAACAATCACATTCCTGCAAACCATGGCAAACAAGTGGGGATAATAAGGTTAAAGAAGATAATTATCTTGAATCAGAACGCTCGGCACGTAAGACTGAAACCTTGGGAAGTAGTATACAGCAGGGTAAAATGCATATAAATGCATCCATGCCTGATGAAGTATCAAGAGCCAATAAGCAAGATCATTCCATTGAACGGTTGGTGAATGCTTATGTCTCACTGTCCTCGGGTATGGAGCAAAATAGTAGAAGAACAAATGTGGATAATGCATCAGGACTTACTGCTACTCCATCAAGACCTGGTAATATTTCTGGTGAGGTAGGACTTGGTTTATCTTCATTAGAGGGTGCTGATTCTACAAGACCAGTTACATCCACAAATGGGGCCATCATTGAGGATACTAAAGTTCACAGATATCACGAAGAATCAGTTGGACACTTCAAAAGTGAACGAGAAGAGGGTGAATTATCACCTAATGGAGACTTTGAGGAGGATAACGTTGCAGTTTATGGACATGCTGGTTTGGAGGCAGTTCATAAAGGAAAAGATGGTACCATTTGTCGACAATACCAAAACAGACAAGGGGAAGAAGTTCGTGGTGAAGCAGGAGGAGAAAATGATGCTGATGATGAAGGTGAAGAAAGTCCCCATAGATCATTGGAGGACAGTGAAAATGCTTCTGAAAATGGTGATGCTTCTGGTACTGAGTCTGCTGATGGCGAGGAGTGTTCTCGAGAACATGAGGAGGATGGAGATCATGAACATGAAAACAAGGCTGAGAGTGAAGGTGAAGCAGAAGGAATGGCTGATGCCAATGATGTTGAGGGAGATGGTGCCTCATTGCCATATTCAGAGCGCTTTCTTGCCACTGTAAAGCCTCTGGCAAAATATGTTCCTCCAGTGTTGCATGACAAAGAAAGGACTGTTAGAGTCTTTTATGGAAATGATTCATTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATCCAATCTGCAAAGGTTAACTCTTCATCTGCTGAAAAGAAGTGGAGGGCTTCAAATGATACCGGCTCTACTGATCAATATGGCAGGTTTATGGATGCCCTTTACAATTTACTGGATGGTTCTTCTGATAGTACAAAATTTGAGGATGACTGTCGAGCTATTATAGGAACTCAGTCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCACCGAGGAGATGGATAACAAGCTGCTTCAACTATACGCATACGAAAAATCAAGAAAACCTGGAAGATTCGTTGATTTAGTTTATCACGAAAATGCCCGTGTTCTTCATGATGAGAACACATATCGTATTGAATGTTCACCTGCACCTACCCAATTGTCTATTCAACTGATGGACTATGGATATGATAAGCCTGAAGTGACTGCTGTGTCAATGGACCCTAATTTTTCAGCCTATCTGCACAATGACTTCCTATCGGTTGTCCCTGACAAAAAGAAGTCAGGAATTTACCTGAAGAGGAATAAGCGCAAGTATGCCATTAGTGATGAATGTTCAAACCAGACCATGGATGGACTACAAATTATCAATGGTCTAGAGTGTAAGATAGCTTGCAATTCATCCAAGATACTGAAGACTTTTTACACCGAACAAGAAGAAAAAGGAGAACCTTGCATCAGAGCAGCTCATGCCATGAACAGGCAAACTCCTCAATCATTTGTTCAAGCAGAGTACAACGGTTCTGCAAATTATTTTCAATTTGAAGATGGTATTCGTTTTGAGCTCGAGATGCGTTTTTGCCATGCATCAATGGCAGGCAGAGAGAGGTGCCAGATGGAAATGGTGCGTCCAGTCCAAGAAGTTGAGCAAAGGATGTGTTTTTTTCTTCTGAAATTCATCTTTCTTGCATTCCTCACATCTTACAATACCAGCACCCAAATAAGGCAATACAGAAGGGAGATGAGGCACAGAGATTGTAGTATACTTTGA 4422 0.4048 MKRSRDDVYMSSQLKRPMVSSRGEPSGQPPMMSGGGQKLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTSGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEHPPQKKPVEFAEAINFVGKIKARFQGNDLVYKSFLDILNMYRRETKPIDEVYKEVAALFQDHADLLREFTHFLPDTSGTASNHHASARNSLHDRSSAMPIIRQMHVEKRERNIASHGDCDLSADHPDPELDRFRADKDQRRYVEKEKDSREDRQRERDDRYYDHDGSRENLSHKWKSGCRAEDSGAEPLHDTDENFGMHPISYACEDKSSLKSMYSPVVGYLDKVKEKLRNPEDYQEFLKCLNIYSKEIIARHELQSLVGNLLGKHTDLMEGFDEFLAQCEKNEGFLAGLLKKRHGLKPMKVEDRDRDRDRDDGMKERDRECRERDKPNATANKDVSVPKMSLYASKDKYAGKPISELDLSNCEQCTPSYRLLPKNYPIPPASQKTELGVEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKINANIIKGDTPIHIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILIRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVFLAEIKEISENKRKDDDVLLAIAAGNSQPIIPHLDFVYPDPEIHEDLYQLIKYSCGEMCTSEQLDKAMKIWTTFLEPMLGVPSRPQGPEDTEDVVKANKNNSAKNGTAIDDGDSSPVTNPKNLNTNRNGDENFPLEQSHSCKPWQTSGDNKVKEDNYLESERSARKTETLGSSIQQGKMHINASMPDEVSRANKQDHSIERLVNAYVSLSSGMEQNSRRTNVDNASGLTATPSRPGNISGEVGLGLSSLEGADSTRPVTSTNGAIIEDTKVHRYHEESVGHFKSEREEGELSPNGDFEEDNVAVYGHAGLEAVHKGKDGTICRQYQNRQGEEVRGEAGGENDADDEGEESPHRSLEDSENASENGDASGTESADGEECSREHEEDGDHEHENKAESEGEAEGMADANDVEGDGASLPYSERFLATVKPLAKYVPPVLHDKERTVRVFYGNDSFYVLFRLHQTLYERIQSAKVNSSSAEKKWRASNDTGSTDQYGRFMDALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATEEMDNKLLQLYAYEKSRKPGRFVDLVYHENARVLHDENTYRIECSPAPTQLSIQLMDYGYDKPEVTAVSMDPNFSAYLHNDFLSVVPDKKKSGIYLKRNKRKYAISDECSNQTMDGLQIINGLECKIACNSSKILKTFYTEQEEKGEPCIRAAHAMNRQTPQSFVQAEYNGSANYFQFEDGIRFELEMRFCHASMAGRERCQMEMVRPVQEVEQRMCFFLLKFIFLAFLTSYNTSTQIRQYRREMRHRDCSIL 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1701 1473 SUPERFAMILY PAH2 domain 332 397 IPR036600 GO:0006355
Aed7g1701 1473 MobiDBLite consensus disorder prediction 772 820 - -
Aed7g1701 1473 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Aed7g1701 1473 Coils Coil 548 568 - -
Aed7g1701 1473 MobiDBLite consensus disorder prediction 952 972 - -
Aed7g1701 1473 MobiDBLite consensus disorder prediction 233 308 - -
Aed7g1701 1473 MobiDBLite consensus disorder prediction 1 37 - -
Aed7g1701 1473 MobiDBLite consensus disorder prediction 1019 1033 - -
Aed7g1701 1473 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Aed7g1701 1473 Pfam Paired amphipathic helix repeat 350 394 IPR003822 GO:0006355
Aed7g1701 1473 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Aed7g1701 1473 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Aed7g1701 1473 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Aed7g1701 1473 MobiDBLite consensus disorder prediction 194 214 - -
Aed7g1701 1473 MobiDBLite consensus disorder prediction 772 849 - -
Aed7g1701 1473 Pfam C-terminal domain of Sin3a protein 1120 1355 IPR031693 -
Aed7g1701 1473 MobiDBLite consensus disorder prediction 885 911 - -
Aed7g1701 1473 MobiDBLite consensus disorder prediction 419 448 - -
Aed7g1701 1473 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Aed7g1701 1473 PANTHER SIN3B-RELATED 1 1361 IPR039774 GO:0003714
Aed7g1701 1473 ProSiteProfiles PAH domain profile. 328 397 IPR003822 GO:0006355
Aed7g1701 1473 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1361 - -
Aed7g1701 1473 MobiDBLite consensus disorder prediction 885 909 - -
Aed7g1701 1473 SMART hdac_interact2seq4b 479 579 IPR013194 -
Aed7g1701 1473 MobiDBLite consensus disorder prediction 1000 1086 - -
Aed7g1701 1473 Pfam Sin3 family co-repressor 481 572 IPR013194 -
Aed7g1701 1473 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Aed7g1701 1473 MobiDBLite consensus disorder prediction 821 839 - -
Aed7g1701 1473 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Aed7g1701 1473 MobiDBLite consensus disorder prediction 419 454 - -
Aed7g1701 1473 MobiDBLite consensus disorder prediction 1046 1073 - -
Aed7g1701 1473 Gene3D Paired amphipathic helix 327 399 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1701 Aed-Chr7 20391246 20403962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1701 28 142 WRKY Transcription Factor Family AT4G12020 52.137 2.31e-25 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed7g1701 Sin3a_C 3e-53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1701 K11644 - gmx:100781798 2376.67