Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1692 ATGATTGTGACTCGCTCTGCTTTGATGCTCCATCTCCAAAACCCACCAATTCGCTACCACTTTTTCTCCAACTTCAACTATGTTCACACCTCATTCCTCAAACCCACCTTGCCTCCTTCTCTATTCAAACCTCGCCAAGCACAAACCAGAACCTTTGTAAGCGCTGTTGCATCATCATCATCACAAGGTTCCAATGGCAAAGACACTTTTTTTGCAGAAGAAAACGTTTCGTGGAGCTCACTCGGTCTCTCTGATACCGTTTCTCGAGCGCTCTCTAATATTGGCCTCAGTAGACCCTCTCTCGTTCAGGCATCTTCTGTACCGTCTGTGCTGTCAGGGAAGGATGTTATTATTGCCGCGGAGACCGGCAGTGGTAAGACATACAGTTATCTAGTTCCTCTAATTGATAAGCTTAGGGACACCCAGGAACATTCTCTACCTGCTGTGTCTGATCAAGAAGTGACCTTGCCGCAGAAAGTTCTGCTCGTTCTTTGTCCAAATGTGCAACTTTGTGAGCAGGTAGTGAGGATGGCTAACAGTCTCTGTAGAGATGATGGTGAGACAATAGTTAGTGTGGCAGCCATTTGTGGCAAACAGGGATGGCCAATCCGGGAACCTGACGTCATTGTGACGACACCTGCAGCCCTTCTGAATTATGTTGACCTTGATAGAACCCGCCGCATGGAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTAATCCGCCTGATAAACTTGCTCCGCTTTGATGAAAAACTCTTGTCTCGATCAAAAAAATCAGCAGCAGTGAAACAGGAATCTTCCTTGTCATCAGAAGATGCTTTTGAAGTTGAAGAGGAAATTCAAACTGAAGTCATCTTAGAAGAGGATGAGATTGATGAAGAGGATATTGTTATTATTAATAATGAAGCTGAATCTGTTAAACAAAGAGACTGGAGGAGAGTGAGGAAAACTTATGAGCGTAGTAAACAGTATGTTTTTGTTGCTGCTACACTTCCAGTGAATGGAAAGAAAACTGCTGGAGGGGTCTTGAAACATATGTTTCCTAATGCTGAGTGGGTTTGTGGAAACTATCTTCATTGTCACAATCCACGATTGGAGCAAAAATGGATAGAAGTCACAGTTGATACTCAAGTGGATGAACTCATAAAGGCTGTGAATCACAGATTCAGATCTGAAGATTTGGTTAATGCTGGTGGCATTCACAGAACAATGGTGTTTGCCAATACTGTTGAGGCTGTTGAAGCTGTGGCAAAGATATTACTCCTATCTGAGATTGAATGTTTACGTTATCATAAGAATTGCACATTGGAAGAGCGAGCACAGACCTTAGTTGATTTTCAGGAGAAAGGTGGTGTTCTTGTATGTACTGATGCTGCTGCTCGTGGTGTTGATATTCCGAATATTTTACATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGCCGTACAGCTAGAGCTGGTCAAATTGGACTTGTAACTAGCATGTTCACTGAATCCAACAGGGAGCTTGTTGATGCAGTGCGTCGGGCAGGGGAAATTGATAAACCTGTGGAAACTGCATTTAGCAGGAAAAGAAGCTTCCGCAATAAGATCAAGAAGAGGGGTACAAAAGCCAGAGATTCAGCAACAATTAAAGAGAGTGCTCTAGCATGA 1719 0.4311 MIVTRSALMLHLQNPPIRYHFFSNFNYVHTSFLKPTLPPSLFKPRQAQTRTFVSAVASSSSQGSNGKDTFFAEENVSWSSLGLSDTVSRALSNIGLSRPSLVQASSVPSVLSGKDVIIAAETGSGKTYSYLVPLIDKLRDTQEHSLPAVSDQEVTLPQKVLLVLCPNVQLCEQVVRMANSLCRDDGETIVSVAAICGKQGWPIREPDVIVTTPAALLNYVDLDRTRRMEFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSRSKKSAAVKQESSLSSEDAFEVEEEIQTEVILEEDEIDEEDIVIINNEAESVKQRDWRRVRKTYERSKQYVFVAATLPVNGKKTAGGVLKHMFPNAEWVCGNYLHCHNPRLEQKWIEVTVDTQVDELIKAVNHRFRSEDLVNAGGIHRTMVFANTVEAVEAVAKILLLSEIECLRYHKNCTLEERAQTLVDFQEKGGVLVCTDAAARGVDIPNILHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMFTESNRELVDAVRRAGEIDKPVETAFSRKRSFRNKIKKRGTKARDSATIKESALA 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1692 572 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 364 IPR014001 -
Aed7g1692 572 CDD DEADc 89 268 - -
Aed7g1692 572 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 557 IPR001650 -
Aed7g1692 572 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 43 536 - -
Aed7g1692 572 Gene3D - 381 571 IPR027417 -
Aed7g1692 572 Pfam DEAD/DEAH box helicase 102 267 IPR011545 GO:0003676|GO:0005524
Aed7g1692 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 521 IPR027417 -
Aed7g1692 572 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 43 536 - -
Aed7g1692 572 SMART helicmild6 429 509 IPR001650 -
Aed7g1692 572 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 76 104 IPR014014 GO:0003724
Aed7g1692 572 SMART ultradead3 95 383 IPR014001 -
Aed7g1692 572 CDD SF2_C_DEAD 380 518 - -
Aed7g1692 572 Gene3D - 43 362 IPR027417 -
Aed7g1692 572 Pfam Helicase conserved C-terminal domain 416 509 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1692 Aed-Chr7 20239761 20245654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1692 323 536 Eukaryotic Initiation Factors Gene Family AT5G11200 27.016 5.25e-13 69.3