LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed7g1612	ATGACACAAAGCTCAACAAAGGGGAGCGTATACTCTCTAATCTCACGCAAGCAATTGAGGGATCTCGGATTTTTGTTATTGTTTTCTCAAAGAACTGCTTCTTCATCATGGTGCTTGAGAGAGCTTGAAAAGATCCTTCATTGTGTTCAAGTCTCGGGTAAACATGTCTTGCCTGTTTTCTATGATGTTGATCCATCTGAGGTTCGAAGACAAACGGGGGATTATGAGAAAGCTTTCACCAAACACGAAGAGAGATTCAAAGATGATAAAGAGAAGATGGAGGAAGTGAAAAGATGGAGAGAAAATCTCACACGAGTAGCCGATCTCTCTGGTTGGGATGTGACAAATAAATCACAATATGCTGAAATTGAAAAAATTGTTCAAGTGATAATAAGTAAACTGCGTCACAATTTTTCAAGTCTTCCAAATGATCTAGTTGGGATGGAATCTCCGGTTGAAGAACTAGAAAAACTTTTACTTTTTGACCCAGTTGATGATGTTCGCACCGTAGGAATTTGTGGAATGAGTGGAATAGGAAAAACAACTCTTGCTTCTATTTTATATGATAGAATCTCTAATCAATATGACGCTTGCTGTTTTATTGATGTAAGCAAAGTTTATAAAGATTGTGGTCCAATTGGTTTAGTAAAGCAACTACTCCATCAAACATTGAATGAAGAAAACTTGCAGATATGCAATCTTTATAATGCAGCCAAGTTGATACAAAGTAGGCTACATTACGTGAAGACCCTAATAGTTCTTGACAATGTTGATGAAGTTGAACAACCAGAGAAATTAGTTGTGAATCCAGAATGGTTAGGTGCCGGAAGTAGAATCATCATAATTTCTAAAGACATGCATATCTTAAAAGAGTACGGTGTGACTGCAGTCTACAAAGCTCAACTCTTAAATGGTGCTAATTCTCTTAAATTGTTTTGTAAAAAGGCTTTCAATTGTGAGGATATTGTGGGAGGTTACAAAGAGTTGACATATGATGTGCTGAAATATACTAATAACCTACCACTAGCAATTAAAGTACTAGGTTCGTTTTTGTCTGGTCGAAGTGTCTCAGAGTGGAGAAGTGCCTTAGTTAGACTCGAAGAGAATGCACACAAAGATATTATGGATGTGCTTCAGATAAGTTATGATGGGCTACAAGAATTGGAAAAGCAAATATTTTTAGATATTGCTTGTTTCTTCAGCGGGTACGAGGAGTTATATGTGAAGAAAGTTCTAGATTGCTGTGGATTTCATGCTGAAATTGGAATAAGAGTCGTCCTTGATAAATCACTCATAGACAATTCACATGGAGACATTCAAATGCATGGTTTGTTGAAAGTTTTGGGCAGAAAAATTGTTAAAGGCAATTCACCAAGAGAGCCAGAAAAGTGGAGCAGGGTTTGGCTCCATAAGGATTTCTACAATATGTCAAAGGCAACGGAAACGGCAATCAATGAAGCCATTGTTTTAGACGTATCTAGAGAGAGGGAAAAACTGATGGTTGATGCTGAAGCGTTGTCCAAAATGAGTAACCTTAGATTGCTTATATTTCATGATGTGAAGTTTATGGGAAGCCTTAATTGCCTCTCCAATAAACTACAATTTCTTCAGGGGTATAACTATCCTTTCTCATATTTACCTTCAAGTTTTCAGCCGAACAAACTGGTTGAATTGATCTTGCAACGAAGCAACATCAAAAAACTATGGAAAGACATAAAGGTGAGCCAAGAAACAACTACCCCTATTGGTTGGATTGATATTGTTGTTCCTGGAAATCAAATACCAAGGTGGTTCAACAATCAAAATGTTGGAACTTCAATCAGTCTAGACCCATCTCCCATTATGCTTGACATTGATAACTGGATTGGCATTGCTTGCAGCGTGGTATTTGTGGCAGTTGCTGATCCAATTAGATTGGATAATCATGTTTTGAAATCCTCTATATGCATTGATTTTGAGATGAAATCTTATTCATCCCGGGCTTCTTCCCCGCTCTATATTCCAATACTTCTTGATAGGGGTCATGTAACCCTCGAATTGCATCACATGTGGCTACTCTATTTGACTAGGGCAGAATTTATTTCTTATTTTAAAATAGAAACAATGATTGATCTTAATGGCATCAAAATGCTAATAATGGTTGATCGCTCCAAAGGTTTGCACTTGGAGCTTGGGTGTGAGACTTATTTCACAGTTCCAATACTTTTCAAGAGAGATTTGGTCACAGTTGAATACCATCACTTGTTAGTAATGTTCTTCACTAGAGAACTTTTCATTCCTCTTGTAAGTGAGTGTTCAAATGAAATGAGTGATCTTGATTCAATGGAATTCGCACCCCTCGTTTATGACCCTCTTGGTTTGCATTTGGAGGTGAAAAATTGTGGGTATCGTTGGATATTTGAGGAGGATATTCAACAATTCAAATCAAACATGATGTGCAGTGGAAATTCTTCATCTCGGAAGCGGAAGCGTTTAACAAGCGATTAA	2487	0.3735	MTQSSTKGSVYSLISRKQLRDLGFLLLFSQRTASSSWCLRELEKILHCVQVSGKHVLPVFYDVDPSEVRRQTGDYEKAFTKHEERFKDDKEKMEEVKRWRENLTRVADLSGWDVTNKSQYAEIEKIVQVIISKLRHNFSSLPNDLVGMESPVEELEKLLLFDPVDDVRTVGICGMSGIGKTTLASILYDRISNQYDACCFIDVSKVYKDCGPIGLVKQLLHQTLNEENLQICNLYNAAKLIQSRLHYVKTLIVLDNVDEVEQPEKLVVNPEWLGAGSRIIIISKDMHILKEYGVTAVYKAQLLNGANSLKLFCKKAFNCEDIVGGYKELTYDVLKYTNNLPLAIKVLGSFLSGRSVSEWRSALVRLEENAHKDIMDVLQISYDGLQELEKQIFLDIACFFSGYEELYVKKVLDCCGFHAEIGIRVVLDKSLIDNSHGDIQMHGLLKVLGRKIVKGNSPREPEKWSRVWLHKDFYNMSKATETAINEAIVLDVSREREKLMVDAEALSKMSNLRLLIFHDVKFMGSLNCLSNKLQFLQGYNYPFSYLPSSFQPNKLVELILQRSNIKKLWKDIKVSQETTTPIGWIDIVVPGNQIPRWFNNQNVGTSISLDPSPIMLDIDNWIGIACSVVFVAVADPIRLDNHVLKSSICIDFEMKSYSSRASSPLYIPILLDRGHVTLELHHMWLLYLTRAEFISYFKIETMIDLNGIKMLIMVDRSKGLHLELGCETYFTVPILFKRDLVTVEYHHLLVMFFTRELFIPLVSECSNEMSDLDSMEFAPLVYDPLGLHLEVKNCGYRWIFEEDIQQFKSNMMCSGNSSSRKRKRLTSD	828

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed7g1612	828	Pfam	C-JID domain	589	804	IPR045344	-
	Aed7g1612	828	Pfam	NB-ARC domain	150	383	IPR002182	GO:0043531
	Aed7g1612	828	PRINTS	Disease resistance protein signature	244	258	-	-
	Aed7g1612	828	PRINTS	Disease resistance protein signature	169	184	-	-
	Aed7g1612	828	PRINTS	Disease resistance protein signature	337	351	-	-
	Aed7g1612	828	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	133	396	IPR027417	-
	Aed7g1612	828	Pfam	Leucine Rich Repeat	554	573	IPR011713	-
	Aed7g1612	828	Gene3D	-	303	386	IPR042197	-
	Aed7g1612	828	SUPERFAMILY	"Winged helix" DNA-binding domain	373	475	IPR036390	-
	Aed7g1612	828	Gene3D	-	132	296	IPR027417	-
	Aed7g1612	828	SUPERFAMILY	Toll/Interleukin receptor TIR domain	24	112	IPR035897	-
	Aed7g1612	828	Gene3D	-	6	131	IPR035897	-
	Aed7g1612	828	PANTHER	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	585	696	-	-
	Aed7g1612	828	PANTHER	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	142	569	-	-
	Aed7g1612	828	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	142	569	IPR044974	GO:0006952
	Aed7g1612	828	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	585	696	IPR044974	GO:0006952
	Aed7g1612	828	Pfam	TIR domain	26	140	IPR000157	GO:0007165
	Aed7g1612	828	ProSiteProfiles	TIR domain profile.	1	134	IPR000157	GO:0007165
	Aed7g1612	828	SMART	till_3	7	109	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed7g1612	Aed-Chr7	19346832	19358789	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed7g1612	146	573	WRKY Transcription Factor Family	AT5G45050	34.649	1.33e-62	228

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed7g1612	-		-	gmx:100820213	919.842