Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1561 ATGGAGCTTTTAGGATTCAAAACAAAGTTTAGATCACATTTCAAAGAAACATGCACATTAGGCTTGAGAAACCCCTTCTCATTAGTAGTTTCACCACCATTGATTGTTGAGGATGGTTTTAATGTTCACATTGTTGATAATGCATGCTTGATGATCTTTAATGCAACCAATGTAATCATCCATGACCTTAGAATTCATCATTGCCGACCTCAAGTTCCTGCAATGGTAACAGGTCCTAATGGAAAAGTGATGCCTTTGGTCAATGGAGAGGCAATAAAATTAGTAATAGTTTCAAAGGTTTGGATTGATCGTAATACACTTTATGATTTTCAAGATGGTCTTCTTGACATCACACATGATTCCACTAATTTTAGAGAGCAAAACAAGATTATGCTTCTTGGACATAATGATGGGTATATGAGAGACAAGGACATGAGAAATTCATTATGGTGTATAACTATTTTAGACCTAATTGCCACCAACGCATCCCAAGGCAACTAA 501 0.3593 MELLGFKTKFRSHFKETCTLGLRNPFSLVVSPPLIVEDGFNVHIVDNACLMIFNATNVIIHDLRIHHCRPQVPAMVTGPNGKVMPLVNGEAIKLVIVSKVWIDRNTLYDFQDGLLDITHDSTNFREQNKIMLLGHNDGYMRDKDMRNSLWCITILDLIATNASQGN 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1561 166 SUPERFAMILY Pectin lyase-like 38 150 IPR011050 -
Aed7g1561 166 Gene3D - 14 151 IPR012334 -
Aed7g1561 166 PANTHER PECTATE LYASE 18-RELATED 22 146 IPR045032 GO:0030570
Aed7g1561 166 PANTHER PECTATE LYASE 22 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1561 Aed-Chr7 18453519 18454266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1561 14 146 Polysaccharide Lyase AT5G09280 48.592 2.99e-39 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1561 K01728 - gmx:100811216 176.792