Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1532 ATGGCTTCCACAAGGAAAAGTGGTCTTCTCCTATGGTTTTGCGGAATGCATTTGTGCTTCGTTCTGGTTGGTTGCAGCACTTCAAGGACTTCCTTTAGGAACTTAAGGGAGGTCAACTGTCCTGACTCAACATTTTCTCATCATGAAGTCAAACTGTATGTACAAAACAAGAAGGTCATAATGGAAAATGGCCTAATTCGTGTCACTTTGTCAAAACCGGAGGGCACTGTCCTTGGAATATCATATAATGGAATTGATAATGTGCTTGAAAGTCGCAACAAATTTACCAATAGAGGAATTAAACACATTCGTGTTCGCAGGTATTTTGACATTGTCTGGAATGCTCTGGGAAGCACTTCGAAACTGTGGGGAATTCATGGGAGTAAATTTTCTGTTATTGAGGCAAGTGAGAATCAAATAGAGGTTTCGTTTTCAAGAACATGGAATATGGACAGCTCAAGTATCCCCTTAAACATAGACAAAAGATATATTTTACATCGAGGTAGTTCAGGATTATACATATACTCTATATTGGAGCGCTCCGAAAATTTTCCTGCTATGGAGATTGATCACATTAGGATCGTTTTCAAGCTACGAAAGGACAAGTTCCACTACATGGCTATAGCAAATGATAGGCAGCGAGTAATGCCAACTGCAGAAGATAGATCAACAGGGCAACGCCTTGATTTTGATGAAGCTGTTCTAATAACCAACCCTAATAACCCAAAACTTCAAGGAGAGAATAAAGACAATAAGCTTCATGGGTGGATTAACTCTAACTCCAAGTCCAATGAATCTGTGGGCTTTTGGATGATAACACCAAGCAATGAGTTTCGTAGTGGTGGCCCAATTAGGCAAGGTCTCACTTCTCATGTTGGCCCTACCACCCTCAATATACTTCATACCACTCACTACTCAGGGAAGGAGGTAACCATGGCATTAAAAGAAGGGGAACCCTTCAAGAAAGTTTATGGCCCTGTTTTTGCTTATCTCAACTCGCTGTCCGAGGAAATCAAAAGTTGGCCCTATGATTTCCCTAAATCAGAAGATTTTATCCCAGCCAATAATCGAGGAAGAGTGGAAGGAAGATTACTAGTACAAGATAGGGTTACCAATTCTGGATTGAAGCTGACAAAGTGGGGCACTTCACAATTGAAAATATTGTACCGGGGGACTATGATTTATACGCATGGAAATGGACCTACTATATGGAAAATTGGTATTCCAGATCGCTCTGCTGCAGAGTTCTATGTTCCAAACCCTTATCCTAACCTCATGAACCGATTATACATTGGGAAACCAATACACAAGTTTAGACAATACGGGTTATGGCAGCGTTATGTTGAGTTATACCCAAATCAGGACCTAGTTTACAATGTTGATGTCAGTGATTATAGTAAAGATTGGTTTTATGCGCAGGTTCCGAGGAACATAGGAAACAAGACATTTCATCCGACAACATGGGAGATTAAATTCCATCTCCCATTTGTTATAAGAGGCACTCACACACTACGACTTGCCTTGGCCTCAGCTACTAGATCTAACTTGGAGGTTCGGTTCAATAACCCTGTGTCTCGTTCTCCCCTCTTCTCTACGGGATTAATAGGCCGAGACAATGCAGTAGCAAGACATAGCATCCATGGATTGTACTGGCCTTACAACATTGAAGTGCCAAGCAATCTATTGTTGGAAGGAACCAACACCATCTATCTTAGGCAATCAAAAGCTCTAAGTCCTTTCCATGGAATCATGTATGACTACATCCGTTTGGAAAGACCCGAAACTTAG 1788 0.4116 MASTRKSGLLLWFCGMHLCFVLVGCSTSRTSFRNLREVNCPDSTFSHHEVKLYVQNKKVIMENGLIRVTLSKPEGTVLGISYNGIDNVLESRNKFTNRGIKHIRVRRYFDIVWNALGSTSKLWGIHGSKFSVIEASENQIEVSFSRTWNMDSSSIPLNIDKRYILHRGSSGLYIYSILERSENFPAMEIDHIRIVFKLRKDKFHYMAIANDRQRVMPTAEDRSTGQRLDFDEAVLITNPNNPKLQGENKDNKLHGWINSNSKSNESVGFWMITPSNEFRSGGPIRQGLTSHVGPTTLNILHTTHYSGKEVTMALKEGEPFKKVYGPVFAYLNSLSEEIKSWPYDFPKSEDFIPANNRGRVEGRLLVQDRVTNSGLKLTKWGTSQLKILYRGTMIYTHGNGPTIWKIGIPDRSAAEFYVPNPYPNLMNRLYIGKPIHKFRQYGLWQRYVELYPNQDLVYNVDVSDYSKDWFYAQVPRNIGNKTFHPTTWEIKFHLPFVIRGTHTLRLALASATRSNLEVRFNNPVSRSPLFSTGLIGRDNAVARHSIHGLYWPYNIEVPSNLLLEGTNTIYLRQSKALSPFHGIMYDYIRLERPET 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1532 595 CDD RGL4_N 50 333 - -
Aed7g1532 595 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 53 374 - -
Aed7g1532 595 SUPERFAMILY Galactose mutarotase-like 63 345 IPR011013 GO:0003824|GO:0005975|GO:0030246
Aed7g1532 595 SUPERFAMILY Galactose-binding domain-like 399 591 IPR008979 -
Aed7g1532 595 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 392 594 - -
Aed7g1532 595 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 53 374 - -
Aed7g1532 595 Gene3D - 400 591 - -
Aed7g1532 595 Gene3D - 51 333 IPR014718 GO:0030246
Aed7g1532 595 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Aed7g1532 595 Pfam Polysaccharide lyase family 4, domain III 402 590 IPR029411 -
Aed7g1532 595 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 392 594 - -
Aed7g1532 595 Pfam Rhamnogalacturonate lyase family 48 247 IPR010325 -
Aed7g1532 595 CDD RGL4_C 404 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1532 Aed-Chr7 17764226 17771010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1532 45 595 Polysaccharide Lyase AT1G09910 44.737 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1532 K18195 - pda:103701115 548.895