Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1531 ATGGCTTCGATAGGGAAAACTGGTTTGCTCCTATGGTTGTGCGGAATAAATTTGTTCTTGCTCGTTGGTTGCACTTCAAGGGGTTTAAGGGAGATCAACCGTCCTGACACAGCATTTAATCATCCTGAAGTCAAACTACATGTAGGACACAATCAGGTCATATTGGAAAATGACCTCATTCGTGTCACTTTGTCAAAACCAGAGGGCACTATCCTAGGAATATCATATAATGGAATTGATAATGTGCTTGAAAGTCGCAACAAATTTAATAATAGAGGAATTCAAGGGAGTAAATTTGAAGTTACAGAGGCAAGCAAGAATCAAATAGAGGTTTCATTTTCAAGAACGTGGGACATGAACGGCTCAAATCTCCCCTTAAACATAGACAAAAGGTATATTTTACGTAGAGGTAGTTCGGGATTATACATATACGCTATATTTGAGCATCCCGAAAACTTTCCTGCTGTGGACATTGATCACATTAGGATCGTTTTCAAGCTACAAAAAGACAAGTTTCACTACATGGCAATAGCAGATGATAGGCAACGAGTAATGCCAACGGAAGAAGATAGATCAATAGGGCAACGCCTTGATTTTGCTGAAGCTGTTCTAATATCCAACCGTAGTAACTCGGAACTACAAGGAGAGGTTGATGATAAATACCAATATTCTTGTGAGAACAAAGACAATAAACTCCATGGATGGATTAACTTTGACACCAAATCCAATGAGTCAGTGGGCTTCTGGATGATAACACCAAGCAATGAGTTCCGTAGTGGTGGCCCAATCAAGCAAGGCCTAACTTCTCATGTTGGCCCTACGACCCTTAATATACTTCATACCACACACTACTCGGGGAAGGAGGCAACCATGGCATTAAAAGAAGGGGAACCCTTCAAGAAAGTTTATGGCCCTGTTTTTGCTTATCTCAACTCAGTTTCTAGTGGCCATGATTCACAAGCTCTATGGAGTGATGCTGCACAACAGGCACATTCAAGGAGGGAAATTTCTATATGGCGAAAATGCTTATGTTGGTTTGGCTCTACCCGGAGATGTGGGATCATGGCAGAGGCAAAGCAAGATCGCTCTGCTGCAGAGTTCTATGTTCCAAACCCTTATCCTAACCTCATGAACCGATTATACATTGGGAAACCAATACACAAGTTTAGACAATACGGGTTATGGCAGCGTTATACCGAGTTATACCCAAATCAAGACCTTGTTTATAATGTTGATTCTAGTGATTATAGTAAAGATTGGTTTTATGCTCAAGTTCCCAGGAACATAGGAAACAACACATTTTACCCAACAACATGGGAGATTAAATTCCATCTCCCATTTGTTATAAGAGGCACCTACACGCTACGACTTGCCTTGGCCTCAGCTACAAGTTCAAACTTAGTGGTAAAATTATAA 1416 0.4075 MASIGKTGLLLWLCGINLFLLVGCTSRGLREINRPDTAFNHPEVKLHVGHNQVILENDLIRVTLSKPEGTILGISYNGIDNVLESRNKFNNRGIQGSKFEVTEASKNQIEVSFSRTWDMNGSNLPLNIDKRYILRRGSSGLYIYAIFEHPENFPAVDIDHIRIVFKLQKDKFHYMAIADDRQRVMPTEEDRSIGQRLDFAEAVLISNRSNSELQGEVDDKYQYSCENKDNKLHGWINFDTKSNESVGFWMITPSNEFRSGGPIKQGLTSHVGPTTLNILHTTHYSGKEATMALKEGEPFKKVYGPVFAYLNSVSSGHDSQALWSDAAQQAHSRREISIWRKCLCWFGSTRRCGIMAEAKQDRSAAEFYVPNPYPNLMNRLYIGKPIHKFRQYGLWQRYTELYPNQDLVYNVDSSDYSKDWFYAQVPRNIGNNTFYPTTWEIKFHLPFVIRGTYTLRLALASATSSNLVVKL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1531 471 Pfam Rhamnogalacturonate lyase family 38 217 IPR010325 -
Aed7g1531 471 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Aed7g1531 471 CDD RGL4_N 51 315 - -
Aed7g1531 471 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 361 470 - -
Aed7g1531 471 Pfam Polysaccharide lyase family 4, domain III 360 469 IPR029411 -
Aed7g1531 471 SUPERFAMILY Galactose mutarotase-like 51 314 IPR011013 GO:0003824|GO:0005975|GO:0030246
Aed7g1531 471 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 48 339 - -
Aed7g1531 471 SUPERFAMILY Galactose-binding domain-like 360 465 IPR008979 -
Aed7g1531 471 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 361 470 - -
Aed7g1531 471 Gene3D - 46 323 IPR014718 GO:0030246
Aed7g1531 471 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 48 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1531 Aed-Chr7 17747370 17753607 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1531 361 471 Polysaccharide Lyase AT1G09910 48.214 9.51e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1531 K18195 - gmx:100792575 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0220 6 1894076 1896796 Aed7g1531 7 17747370 17753607 PCT