Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1529 ATGCTGAATACAAACCAACGCCAACAGTTGGTAGTTGACAATGGTATTCTTTCCGTCACCTTTGCAAGACCTGAGGGCTACATTGTTGAAATTTCATACAACGGAATTGAAAATATACTTGAAGATGAAAACGAAGAACAAGATAGAGGAATCTTCGGTACAAATTTTTCGGTTATAGCAGCTGACGGGAATATGGTGGAACTTTCATTTTCAAGAACATGGACATCATCCATGAATGGCTCGTGTGTTCCCATTAACATTGACATGAGTGGTGACTCGGGGTTTTATTCATATGCAATATTTGATCGACCTGAAGGATTCCCCGCGGCAGAGATTGACCAAATTAGGATTGTTTTCAAACTCAAGAACGACAGGTTCAAATATATGGCTATATCAGACGACAGGCAGAGAAGTATGCCAACGATGCGAGACAGAGAAACAGGGCAAACCCTGGCATACCCAGAAGCAAACATGGCTAACACTGTGCATGGATGGATCAGTTATGAAGCTGATGCACCATCCATGGGTTTTTGGATGATAACGCCAAGCAATGAGTTTCGCAATGCTGGCCCCATCAAGCAGGACCTTACTTCCCATGTTGGCCCCATCACCCTCTCGATGTTTGTGAGTACTCACTATGCTGGAAAGGAGGTAACCATGTCATTTCAAGAAGGGGAGAGTTATAAAAAGGTGTTTGGCCCTGTATTTGCCTACCTTAACAATGCTCCAACTGAGGATGATACACTATCCCTCTGGTCAGATGCAGTGCAGCAGTTTACTAAAGAAGTCAGAAGTTGGCCTTACGAATTTCCAAAATCAGTAGATTTCGTTCCACCCTATCAAAGGGGAATAGTTTTGGGAAGATTACTAGTACAAGATAGGTACTTCAGAAGTGGTAGACTTCTATATGCTAACAATGCTTATGTTGGTCTAGCTTTGCCTGGAGATGAAGGATCATGGCAGACAGAAAGCAAGGGCTATCAATTCTGGACTCAAGCCGATACAAAGGGTTTTTTCCTAATAAATAACATTGTGCCTGGTAACTATAATTTGTATGCATGGGTTCCTGGATTCATTGGTGATTACAGATATAATGCTACAATCATCATCACACCAGGAGGAGTCATGAAAATGGATTCACTTGTGTATGTTCCTCCAAGAAGTGGACCAACCATATGGGAAATTGGGTTTCCAGATCGCACGGCTGCAGAATTCTATGTACCAGACCCTTACCCTACGCTCATGAACAAATTATACAACGAACAACACATAGACAACCAGTATAGAAAGGATTGGTTTTATGCTCATGTTCGGGTCAATGACCCTAACACTAATCCACCAGACTTTGCAACGGGGAAAATAGGAGGAGATAGTGCAATAGCAAGGCATGGTGTGCATGGATTGTATAGGCTATTCAGCATTAACGTACCAAGTGATCGATTTGTTGAAGGAAACAACACCATCTATCTGAAGCAATCAAGATCCAGAAACCCTTTTCAAGGAGTTATGTATGATTATATCCGTTTAGAACGGCCTCCATTGAGATTAATTTGA 1554 0.4196 MLNTNQRQQLVVDNGILSVTFARPEGYIVEISYNGIENILEDENEEQDRGIFGTNFSVIAADGNMVELSFSRTWTSSMNGSCVPINIDMSGDSGFYSYAIFDRPEGFPAAEIDQIRIVFKLKNDRFKYMAISDDRQRSMPTMRDRETGQTLAYPEANMANTVHGWISYEADAPSMGFWMITPSNEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMSFQEGESYKKVFGPVFAYLNNAPTEDDTLSLWSDAVQQFTKEVRSWPYEFPKSVDFVPPYQRGIVLGRLLVQDRYFRSGRLLYANNAYVGLALPGDEGSWQTESKGYQFWTQADTKGFFLINNIVPGNYNLYAWVPGFIGDYRYNATIIITPGGVMKMDSLVYVPPRSGPTIWEIGFPDRTAAEFYVPDPYPTLMNKLYNEQHIDNQYRKDWFYAHVRVNDPNTNPPDFATGKIGGDSAIARHGVHGLYRLFSINVPSDRFVEGNNTIYLKQSRSRNPFQGVMYDYIRLERPPLRLI 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1529 517 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 157 430 - -
Aed7g1529 517 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 157 - -
Aed7g1529 517 Pfam Polysaccharide lyase family 4, domain II 305 374 IPR029413 -
Aed7g1529 517 CDD RGL4_M 281 381 IPR029413 -
Aed7g1529 517 SUPERFAMILY Galactose mutarotase-like 4 247 IPR011013 GO:0003824|GO:0005975|GO:0030246
Aed7g1529 517 Pfam Polysaccharide lyase family 4, domain III 436 509 IPR029411 -
Aed7g1529 517 Pfam Rhamnogalacturonate lyase family 7 157 IPR010325 -
Aed7g1529 517 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 436 513 - -
Aed7g1529 517 Gene3D - 279 379 - -
Aed7g1529 517 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 157 - -
Aed7g1529 517 CDD RGL4_N 1 248 - -
Aed7g1529 517 SUPERFAMILY Galactose-binding domain-like 388 510 IPR008979 -
Aed7g1529 517 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 157 430 - -
Aed7g1529 517 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 436 513 - -
Aed7g1529 517 Gene3D - 2 254 IPR014718 GO:0030246
Aed7g1529 517 SUPERFAMILY Starch-binding domain-like 277 380 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1529 Aed-Chr7 17667247 17675308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1529 5 512 Polysaccharide Lyase AT1G09890 46.228 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1529 K18195 - gmx:100776664 872.463