Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1521 ATGATGGTCTCTCCTATCCCTCAACGGTTGCTTTTGGCTATTATGGTTGTTTCCCTTTTCAATTCAAGCCTTAGTTTTGCAAAGCAATCCAAGATAAATGGCTTGAAAATGAATGTTATTGATAGATGTTGGAGACCAAATCCTGAATGGAGGAAGCATCGATCTCAATTAGCCACATGTTCTGTCGGTTATGCTGGTAAGATGACAAATAACATTGGTAATGACCTTATACATTATGAAGTTATTGACCCCAATGATGATCCTATAAACCCTAAACTTGGCACCTTGAGGTATGGAGCTTCCGTGATTCAAGGTAAAGTGTGGATCACATTTCAAAGAGGCATGCACATTAAATTAAAGAAACCCCTTCTTATTAGTAGTTTCACCACCATTGATGGTCGAGGTGTTAACGTCAACATTGGAAATAATGCATGCTTAATGATCTTTAAGGCCACCAACATAATCATCCATGGTATTCGTATTCATCATTGCAAACCTCAAACTCCTGGGATTGTGATGGGGCCTGAAGGAAAGGTGATTCCTTTAGGCCATGTAGATGGGGATGCAATTAGATTGGTTACAGCTTCAAAGGTTTGGATTGATCATAATACACTTTATGATTGTCAAGATGGTTTGCTTGACGTAACACGAGGTTCCACTTATGTGACTATATCCAATAATTGGTTCAAAAACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGATATGTGAGGGACAAAAACATGAAGGTTACCGTTGTGTACAATCATTTTGGACCTAATTGCAATCAGCGCATGCCAAGAATTCGTCATGGATACGCACATGTGGCCAACAATCTCTATCAAGGATGGATGCAATATGCCATTGGTGGAAGCATGAAACCTAGCCTCAAGAGTGAAGCTAACCTTTTCATAGCACCAACATCAGGGAGTAAGGAGGTAACATGGAGAAAGAGTAGTCTTACAAAAGGGGATACATGGGAATTTCATTCAGTGAGAGATGCCTACGAAAATGGAGCCTCCTTTGCAGTAACAAAGGGAGGACGTGTGCCAAAGCCAAATTATACCAAAGAACAAAGTTTTAAAGTTGTAGATGCCAAATTTGTGAGATCATTGACACGTTCTTCAGGCATACTACGATTCAATTAA 1152 0.3984 MMVSPIPQRLLLAIMVVSLFNSSLSFAKQSKINGLKMNVIDRCWRPNPEWRKHRSQLATCSVGYAGKMTNNIGNDLIHYEVIDPNDDPINPKLGTLRYGASVIQGKVWITFQRGMHIKLKKPLLISSFTTIDGRGVNVNIGNNACLMIFKATNIIIHGIRIHHCKPQTPGIVMGPEGKVIPLGHVDGDAIRLVTASKVWIDHNTLYDCQDGLLDVTRGSTYVTISNNWFKNQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWMQYAIGGSMKPSLKSEANLFIAPTSGSKEVTWRKSSLTKGDTWEFHSVRDAYENGASFAVTKGGRVPKPNYTKEQSFKVVDAKFVRSLTRSSGILRFN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1521 383 PANTHER PECTATE LYASE 18-RELATED 10 381 IPR045032 GO:0030570
Aed7g1521 383 PANTHER PECTATE LYASE 10 381 - -
Aed7g1521 383 Gene3D - 37 381 IPR012334 -
Aed7g1521 383 SUPERFAMILY Pectin lyase-like 32 354 IPR011050 -
Aed7g1521 383 SMART amb_all 114 311 IPR002022 -
Aed7g1521 383 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Aed7g1521 383 PRINTS Pollen allergen Amb family signature 359 382 IPR018082 -
Aed7g1521 383 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Aed7g1521 383 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Aed7g1521 383 PRINTS Pollen allergen Amb family signature 186 207 IPR018082 -
Aed7g1521 383 PRINTS Pollen allergen Amb family signature 60 77 IPR018082 -
Aed7g1521 383 PRINTS Pollen allergen Amb family signature 328 352 IPR018082 -
Aed7g1521 383 Pfam Pectate lyase 120 305 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1521 Aed-Chr7 17559813 17561275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1521 68 323 Polysaccharide Lyase AT5G09280 71.094 2.31e-142 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1521 K01728 - gmx:100780437 680.248