Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1472 ATGGCGTCCGATGGCTTCACCGACAAGAACACTCTGTTCAGAAAACTCAAGGGGAAGTCCGATAATAAGATGTGCTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCATCGCAGCCTCGGCGTGCACATCAGCTTCGTCTACAAATTTAGACTCATGGAGTGTTGA 213 0.5117 MASDGFTDKNTLFRKLKGKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVYKFRLMEC 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1472 70 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 3 66 - -
Aed7g1472 70 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Aed7g1472 70 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Aed7g1472 70 SMART arf_gap_3 10 69 IPR001164 GO:0005096
Aed7g1472 70 Pfam Putative GTPase activating protein for Arf 12 65 IPR001164 GO:0005096
Aed7g1472 70 SUPERFAMILY ArfGap/RecO-like zinc finger 11 63 IPR037278 -
Aed7g1472 70 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 70 IPR001164 GO:0005096
Aed7g1472 70 Gene3D Arf GTPase activating protein 2 69 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1472 Aed-Chr7 16082494 16088754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1472 7 69 C2H2 Transcription Factor Family AT3G07940 47.619 3.14e-16 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1472 K12493 - gmx:100789796 130.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1472 7 16082494 16088754 Aed7g1472 7 16082494 16088754 ECH
Aed6g0187 6 1618344 1619013 Aed7g1472 7 16082494 16088754 PCT