Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1466 ATGGCTGTTGTTGGCAACCCCAGAACTTGGATCCCATATATGAACAGCAAAGATTGTTCACAAGGATTTTGTAGTTTGTACTGTCCTCAATGGTGTTACATAGTGTATCCCCCCCCTCCACCCTTTGAGTACCCTGATGATGATTCAAGCCCAAATTTCTCCCCTCTTGTCATTGCAATCATTGGGATCTTGGCCACTGCTTTTCTTCTGGTGAGTTACTACACTCTAGTTTCCAAGTACTGTGGCCCCAGAGAGTCTGCACGCAGAGACCCAAATGATGCTGACTTCTTGCAACACAATCACAATCACAATCACAATGAGCATGCTTCGGGCCTGGACGAGGCTATGATCAAATCCATTGCGGTTTTCAAGTACACAAAAGGTGTTGGTGGTTCTGTTGGAATCACGGATTGTTCTGTTTGCCTCAGCGAGTTTCAAGACGGTGAAAGTGTTAGACTGTTGCCGAAATGCAGCCACGTTTTCCACGTTCCTTGCATTGACACGTGGCTCAGGTCTCAATCTAGCTGCCCCTTGTGTCGTGCTGGCGTATTCACTTTCACTGCTTCTTCGGCAGCACCACCTGATCAGATTCAGGTTCATCATATTCATACCCCAGAGGTAGAAGAAGAAGAAGAAGAGGACCCTTCAAGAAACGAAACTTCTTCTGATAATTATTACGAAAGTGTTGGATTTGGAGAAGAAAGCATGCGTCATGCTAGAGCGTATCCAAAACCTGCATTGCGTGCCTTCAGTGATTTAAGTAGTGGTTTGCAAGAGAGGCACAGAGTGATTGAGATTAGAGAGTGCGTTGTTGGTAGGTCAGTGTCTTTGGACCATTCGTTTGAATGTGCTCTTTCTGTTGCTGAGGTGTTGCGAATGAACGAAGCTGAAGGGTGCTCCAGTTCCACTGAAGCTGGTACTCCAAAGCGATCACGAGGAGAGAGTAGCAGCAAGTCCACCAGATACAAAACAAGGGTGTTGCATTGTGTGTTGAGCCCAATTGCAATGAAGAGATCGTTTTCCAGCGGAAGATTCTCGGTTACCAAAAGTGGCTGCAGAGGTAGGCATGGAACTGGAACTTTACCCATTTCAGATTTTCATTTAGGCTAG 1110 0.4613 MAVVGNPRTWIPYMNSKDCSQGFCSLYCPQWCYIVYPPPPPFEYPDDDSSPNFSPLVIAIIGILATAFLLVSYYTLVSKYCGPRESARRDPNDADFLQHNHNHNHNEHASGLDEAMIKSIAVFKYTKGVGGSVGITDCSVCLSEFQDGESVRLLPKCSHVFHVPCIDTWLRSQSSCPLCRAGVFTFTASSAAPPDQIQVHHIHTPEVEEEEEEDPSRNETSSDNYYESVGFGEESMRHARAYPKPALRAFSDLSSGLQERHRVIEIRECVVGRSVSLDHSFECALSVAEVLRMNEAEGCSSSTEAGTPKRSRGESSSKSTRYKTRVLHCVLSPIAMKRSFSSGRFSVTKSGCRGRHGTGTLPISDFHLG 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1466 369 CDD RING-H2_EL5_like 137 180 - -
Aed7g1466 369 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 351 IPR044675 -
Aed7g1466 369 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 351 - -
Aed7g1466 369 Pfam Ring finger domain 137 180 IPR001841 -
Aed7g1466 369 SMART ring_2 138 179 IPR001841 -
Aed7g1466 369 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Aed7g1466 369 MobiDBLite consensus disorder prediction 203 226 - -
Aed7g1466 369 MobiDBLite consensus disorder prediction 298 320 - -
Aed7g1466 369 SMART FANCL_C_2 134 185 - -
Aed7g1466 369 MobiDBLite consensus disorder prediction 298 313 - -
Aed7g1466 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 184 IPR013083 -
Aed7g1466 369 SUPERFAMILY RING/U-box 137 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1466 Aed-Chr7 15618052 15619161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1466 1 220 C3H Transcription Factor Family AT3G03550 46.614 1.42e-60 197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1466 7 15618052 15619161 Aed7g1466 7 15618052 15619161 ECH
Aed6g0177 6 1547878 1549404 Aed7g1466 7 15618052 15619161 PCT