Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1460 ATAGATTTGGGTCCCCCACCCTACTCTTTCATTGGCATAAGCTGTGCCAGTGTCTTTGTTGACAGCATCTATGAAATTGGGAAGGAAACCAAAGCATGGATGTGTGAAGAGCCTGTTTCCTTTTACTACACCTTTCTGATTCCTGAAAAGCACAAGACCTTTTCTGCCCCTTCTCACTTTTCCAACTTCATCATCTACGACACTATCTCCGCAACTCCATTTAGCAGCCATGATCACTCTCCGGAGGCTAGTTTCTTGGAAAGTTTAGTGAACTATCAGGGGAATAATGAGCCTGCAGCGTTTGATCATAACGGCGTGTCAAGGACCCAAAAGCGCCTGCCCGGCGAGCCAGAAACCATTGGCAGGAGGCAGAATAATGTTGTGGGGGTGCAAGGGAGGAAGAAGAGGAGAAGAAAACCAAGGGTTTGCAAGAACAAGGAAGAGGCTGAGACACAAAGAATCACACACATTACAGTTGAAAGAAACCGCAGGAAGCAGATGAATGAGCATCTTGCTGTGCTTCGTTCACTCATGCCTGACTCCTACGTCCAAAGGGGTGACCAGGCCTCTATAGTGGGTGGTGCCATAGAGTTTGTGAAGGAGCTGGAGCACCTCTTGCAATCACTTGAAGCTAGAAAGCTGCAACTTCTACAGCGAGAAGTCGCACAAAGCAATGAAAATAATAATAATACGGCCATTTCGAAACTCATGCAACCCCCTTTTGCACAGTTTTTTTTGTATCCTCAGTACACATGGTCCCAAACTCCTAACAAATACACATCCAAGACCAAGGCTGCCATAGCTGATATCGAAGTCACTTTGATCGAGACTCATGCAAATCTTCGAATTCTCACTAGGAGAAGCCTCGTGCAGCTAACAAAGTTACTAGCTGGTTTTCAAACGCTCTTCCTCACCGTCCTACATCTTAATGTCACCACCATAGACCCTTTGGTATTCTATTCGATCAGTGCTAAGGTTGAGGAAGGATTCCAACTTGGTTCAGTAGATGGTATTGCAACGGCAGTTCATCATTTGCTTGCCAGAATTGAAGAAGAGGCTTCCCTTTGCTGTTGA 1074 0.4581 IDLGPPPYSFIGISCASVFVDSIYEIGKETKAWMCEEPVSFYYTFLIPEKHKTFSAPSHFSNFIIYDTISATPFSSHDHSPEASFLESLVNYQGNNEPAAFDHNGVSRTQKRLPGEPETIGRRQNNVVGVQGRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPDSYVQRGDQASIVGGAIEFVKELEHLLQSLEARKLQLLQREVAQSNENNNNTAISKLMQPPFAQFFLYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRRSLVQLTKLLAGFQTLFLTVLHLNVTTIDPLVFYSISAKVEEGFQLGSVDGIATAVHHLLARIEEEASLCC 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1460 357 Pfam Helix-loop-helix DNA-binding domain 152 203 IPR011598 GO:0046983
Aed7g1460 357 PANTHER MAX DIMERIZATION, MAD 61 356 - -
Aed7g1460 357 SMART finulus 157 208 IPR011598 GO:0046983
Aed7g1460 357 CDD bHLH_AtFAMA_like 154 213 - -
Aed7g1460 357 Gene3D - 143 223 IPR036638 GO:0046983
Aed7g1460 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 219 IPR036638 GO:0046983
Aed7g1460 357 MobiDBLite consensus disorder prediction 128 149 - -
Aed7g1460 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 202 IPR011598 GO:0046983
Aed7g1460 357 Coils Coil 199 219 - -
Aed7g1460 357 PANTHER TRANSCRIPTION FACTOR BHLH71 61 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1460 Aed-Chr7 15327717 15330408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1460 143 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 54.595 2.91e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed7g1460 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1460 - - pvu:PHAVU_003G284500g 458.759