Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1448 ATGGGAATTATTCTCTCAGCTGCTAGAAAAAGTTTGAAGCGCAAAGCAGGAGACTTAGCGGATGACGAGCAATCACATCCCAAAGTGCAGCGACGTCGCTCAAATTTACTACCCATCCAACAAATTTCACTTCTCAATTCTCCGGATCGCGATGCCGTCAAGACCGCCGTTCTCAGCCTCTTCGAATATACTAAGAAAGTCCGGCTGTCGCCCTCTATTCGAGAGAACTTGGTAAATACCATAGTGAACTGCGATGCTGTTCCTGCTCTTGTGAGACATCTTCGTGTGTCACCGGATAATGATGACGGTGTTGCCCAATACAAGCCAGAGCATCGCCAACTCATTATAGATGCGGGCGCCTTGCCCTGTCTTGTAGATTTGATGGGAGGTGCTATCCCTCCTCTTGTTGAATTGCTTGAATTCAATGTCACAAAAGTACGGGCAGCAGCTGGATTGGCCTTGGGAACTCTTGCACATGACAACATTGATATTAGTAATCAGATTCATATTTCCCAAAGAGGAGCTATTCCACAATTAATTGGCATGCTTAAGTCTCCAGATGTAGAGCTTCGGAGAATGTCTGTTCGTACACTTAGGAATTTGGCACAGGACTTGCATAATCAAGCCAGTATTGCTCATAATGGAGGGATAGAGCCTCTGCTCAGTCTTCTCGACTCAAACAATGCAAACCTCCAATATGATGCTGCTTTTGCTCTCTATGAACTTGTTGTTAATGAGGATTTTGCTGTAGATTTTATTAAGGTTGGTGGTTTTCAGAAACTGAAAGATGGACATTTCATAGATAAATGTACTAAAATGCCTGTAACAAGCACATTGAAAATGTTAGGGCATCAGATGAAAGGGCAAGTATTAAAGCAACTAATATATCTTATGCGCTCTGAGAAAAAAGAGGTTCAAAGAAGTGTAGCTATTGCTCTTGCTTATTTATGTTCTCCTTTTGATAGAAAAACTGTATTCATTGACAATAATGTATTAGAATTGCTGCTGGATATTCTTCAATCTCCAAACATAAAGCAGAAGGGGGATGCTTCAGCAGTACTTCACAAATTGGCTGCCAAAATGTATTTGGGCGAGGAATATGTAAACAATGGCAAACTTTCTGATGTCACATTCCTGGTTGAAGGTAGAAGTTTTTATGCTCGTCGAGATTGTTTACTTTCTTCAGATGTATTTCAGGCAATGTTTCATGGCGGTTATAGGGAGAGCGAAGCAAAACATGTAGTGATTCCAAATATTAAATGGGATGTCTTTGAAACGATGATGAGATTTATATACACTGGAACAGCAGATGTCAATTTGGACATTGCTCAGGACCTCCTCAGAGCTGCAGATCAGTTTCTTCTGGACAACCTTAAGCTTATTTGTGAATATGCTATTGCTCTGGATATTTCTGAGGAAAATGTTTTACTAACGTACGAGATGTCGGAGGCTTACAATGCTACTACATTAAAACATGAATGTCTACTGTTTGTGCTAAAGAGATTTGATAAACTGAGGTATTGCCCCCTTGTTCATCGCATGGTACCAGAAATACGGATGCTCTTCTCAACTTTACTGAGTGCTGCTGACCCATCCCTATATTTATCCCCTTGTGGCGGGAATGAGCTTTGGATTGGGATTAGTTGTAAAAACTATGATGGGAATCATGGGGATATAATTGAATAA 1686 0.4087 MGIILSAARKSLKRKAGDLADDEQSHPKVQRRRSNLLPIQQISLLNSPDRDAVKTAVLSLFEYTKKVRLSPSIRENLVNTIVNCDAVPALVRHLRVSPDNDDGVAQYKPEHRQLIIDAGALPCLVDLMGGAIPPLVELLEFNVTKVRAAAGLALGTLAHDNIDISNQIHISQRGAIPQLIGMLKSPDVELRRMSVRTLRNLAQDLHNQASIAHNGGIEPLLSLLDSNNANLQYDAAFALYELVVNEDFAVDFIKVGGFQKLKDGHFIDKCTKMPVTSTLKMLGHQMKGQVLKQLIYLMRSEKKEVQRSVAIALAYLCSPFDRKTVFIDNNVLELLLDILQSPNIKQKGDASAVLHKLAAKMYLGEEYVNNGKLSDVTFLVEGRSFYARRDCLLSSDVFQAMFHGGYRESEAKHVVIPNIKWDVFETMMRFIYTGTADVNLDIAQDLLRAADQFLLDNLKLICEYAIALDISEENVLLTYEMSEAYNATTLKHECLLFVLKRFDKLRYCPLVHRMVPEIRMLFSTLLSAADPSLYLSPCGGNELWIGISCKNYDGNHGDIIE 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1448 561 SUPERFAMILY ARM repeat 17 361 IPR016024 -
Aed7g1448 561 SMART BTB_4 374 470 IPR000210 GO:0005515
Aed7g1448 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 215 257 IPR000225 GO:0005515
Aed7g1448 561 Pfam Armadillo/beta-catenin-like repeat 168 202 IPR000225 GO:0005515
Aed7g1448 561 Gene3D - 40 128 IPR011989 -
Aed7g1448 561 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 166 529 - -
Aed7g1448 561 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 128 168 - -
Aed7g1448 561 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 7 128 - -
Aed7g1448 561 ProSiteProfiles BTB domain profile. 374 440 IPR000210 GO:0005515
Aed7g1448 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 174 216 IPR000225 GO:0005515
Aed7g1448 561 Gene3D - 277 369 IPR011989 -
Aed7g1448 561 Gene3D - 129 272 IPR011989 -
Aed7g1448 561 SMART arm_5 318 359 IPR000225 GO:0005515
Aed7g1448 561 SMART arm_5 163 203 IPR000225 GO:0005515
Aed7g1448 561 SMART arm_5 108 159 IPR000225 GO:0005515
Aed7g1448 561 SMART arm_5 204 244 IPR000225 GO:0005515
Aed7g1448 561 Pfam BTB/POZ domain 366 466 IPR000210 GO:0005515
Aed7g1448 561 SUPERFAMILY POZ domain 366 466 IPR011333 -
Aed7g1448 561 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 166 529 IPR044282 -
Aed7g1448 561 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 128 168 IPR044282 -
Aed7g1448 561 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 128 IPR044282 -
Aed7g1448 561 Gene3D Potassium Channel Kv1.1; Chain A 370 506 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1448 Aed-Chr7 14616422 14620919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1448 135 358 U-box Gene Family AT2G23140 27.155 1.19e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Aed7g1448 BTB 2.5e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1448 - - gmx:100783124 491.115