Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1411 ATGGCGACGCTGCTGAGAAAATTGTGTGAATCCGCGTCGCTGAAGAGATCCGGCCCGAACCAGAACCCGTCTTCGGAACAGCAACAAGCAGGTGCGCCGCCGGCGGCCTGCCCTCTTGGCGCCTTCGACCCTCTCCCTGCCGACATCCTGATGCAAATCGTCCGCCTCTTGGGCCCCACACACGCCGCCAAACTCGGCCTCGTTTCCAAGTCGTGGCGATCCCTCGTCTCCGACAACGTCGTCTGGGCCCACTTCCTCCAAACCCACCACCCCCACTCCCCGCTCTTCGCCGAAACCGCCCTCAGCTCCGGCTACCCGCTCCAGCCGCCGACCTTGACTGCGCAGAATTTGCCACGTGTCTCGTTGCAGCATGTTTACGGGCTGCGTGAACGACTCCCTCCTTCTGTTGTCATCGACGGGGGTTCTGGCTATTGCAAATTCGGTTGGAGCAAAGGGGCTTACCCTTTGGGGAGATTCGCGACTTTCTTGGAATTTGGTAATGTTGAGACGCCTATGTATACTAGACTTCGACATTTTTTCGTAACTATCTATAACAGGATGCAGGTGAAACCAAGTTCTCAACCGGTTGTTGTTTCTATACCAATATGCCACTATGATGATACTGAATCAGCTAAAGCATCAAGACAGCAACTTAAAGAAGCAATCTATGCTGCCCTGTTTGACATGAATGTTCCTGCTGTATGTGCTCTCAATCAGGGGACTTTAGCTCTGTATGCCGCAAATCAAACTTCTGGGATAGCTGTTAATATAGGCTTTCAAGTCACTTCGATAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAGGTTGTGGGGCTGGGAGCACTAAAACTTACTGGATTTCTTAGAGAACAAATGCAGCAAAACAACATAAGTTTTGAATCTTTGTACACTGTTCGCACTCTGAAAGAGAAGCTATGTTACGTTGCTGTTGACTATGAAGCTGAGCTATTGAAAGATACACAAGCATCATTTGAAGCTGTAGAAGGGTTGTTTACACTCTCAAAAGAGCGTTTTCAAACAGGAGAGATCTTATTCCAGCCACGTCTTGCTGGGGTGCGAGCAATGGGTCTGCATCAGGCCATTGCACTGTGTATGGATCATTGCTATTCTGCAGAATTAGCAGGCAACAACGATTGGTATAAGACTGTTGTCTTATCAGGGGGAACTGCGTGTTTACCTGGTTTAGCAGAAAGGTTAGAAAAGGAACTTCATTCATCACTTCCTCCTTATATGTCCAATGGAATTAGAGTCATACCTCCTCCATTTGGTGCTGATACTGCATGGTTTGGTGGAAAGATTATTGGCAGTTTGAGCACCTTTCCTGGGCCGTGGTGTACAACAAAAAAGCAATTCCGTCAGAAGTCTAAACTTAACCGCATTTGGTGA 1419 0.4841 MATLLRKLCESASLKRSGPNQNPSSEQQQAGAPPAACPLGAFDPLPADILMQIVRLLGPTHAAKLGLVSKSWRSLVSDNVVWAHFLQTHHPHSPLFAETALSSGYPLQPPTLTAQNLPRVSLQHVYGLRERLPPSVVIDGGSGYCKFGWSKGAYPLGRFATFLEFGNVETPMYTRLRHFFVTIYNRMQVKPSSQPVVVSIPICHYDDTESAKASRQQLKEAIYAALFDMNVPAVCALNQGTLALYAANQTSGIAVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREQMQQNNISFESLYTVRTLKEKLCYVAVDYEAELLKDTQASFEAVEGLFTLSKERFQTGEILFQPRLAGVRAMGLHQAIALCMDHCYSAELAGNNDWYKTVVLSGGTACLPGLAERLEKELHSSLPPYMSNGIRVIPPPFGADTAWFGGKIIGSLSTFPGPWCTTKKQFRQKSKLNRIW 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1411 472 Pfam F-box-like 45 85 IPR001810 GO:0005515
Aed7g1411 472 ProSiteProfiles F-box domain profile. 39 85 IPR001810 GO:0005515
Aed7g1411 472 MobiDBLite consensus disorder prediction 13 37 - -
Aed7g1411 472 PANTHER ACTIN 87 463 IPR004000 -
Aed7g1411 472 MobiDBLite consensus disorder prediction 14 31 - -
Aed7g1411 472 Pfam Actin 182 458 IPR004000 -
Aed7g1411 472 PANTHER MACRONUCLEAR ACTIN 87 463 - -
Aed7g1411 472 CDD NBD_sugar-kinase_HSP70_actin 136 280 - -
Aed7g1411 472 Gene3D - 240 437 - -
Aed7g1411 472 Gene3D - 39 126 - -
Aed7g1411 472 Gene3D - 182 463 - -
Aed7g1411 472 Gene3D Actin; Chain A, domain 4 283 365 - -
Aed7g1411 472 SUPERFAMILY Actin-like ATPase domain 134 255 IPR043129 -
Aed7g1411 472 SMART actin_3 133 462 IPR004000 -
Aed7g1411 472 SMART fbox_2 45 85 IPR001810 GO:0005515
Aed7g1411 472 SUPERFAMILY F-box domain 33 100 IPR036047 GO:0005515
Aed7g1411 472 SUPERFAMILY Actin-like ATPase domain 250 459 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1411 Aed-Chr7 13121532 13129081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1411 182 455 Cytoskeleton Gene Families AT3G12110 33.099 4.04e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1411 K16616 - gmx:100804254 850.892