LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed7g1398	ATGGATGGGGTCGCACGTGCGGAGGAGCAGGCCCAGTCCACGGGCTTGGCCAAGCCCTCGGGGTGGCTTCCCCGCGGCTCCGTGTTCTCTCCTTGTAAGCCGAAGGCCGAAGAAGAAGCTTCTGCTGCTGCTGCTGCTGAGAAGAAGCCGCTGCTGCCACCGTTGCGCGTGGTTGTGAGGAAATCTAAAAATAAAAGATATATTGTCAAAGATCTTCTTGGCCATGGGACATTTGGACAAGTGGCTAAATGCTGGGATTCAGATACCAACAGTTTTGTTGCCGTGAAGATCATTAAAAATCAACCTGCATACTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTATGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAACGACATTTGTGCATTTGCTTTGAATTGCTGGACACAAACTTGTATGAGCTTATCAAGATGAATCATTTTAGGGGATTATCACTTGGTATTGTTCAGCTATTCTCTAAGCAGATTTTATGTGGACTGGCTCTACTAAAAGAGGCTGGTATTATTCACTGTGATCTGAAGCCGGAAAACATTCTTTTATGTACGAGCTCTGTGAAGCCAACAGAAATAAAAGTCATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTTTACTCTTATATTCAGAGTCGATACTATAGATCACCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGGTGCATAGTGGCAGAATTGTTTCTTGGATTACCATTATTCCCTGGGGCTTCAGAATTTGATCTCTTGAAGCGGATGATTGAAATACTTGGAGGACAACCTCCTGATTATGTACTAAGGGATGCCAAAAACACCAGTAAATTCTTTAAGTGTATTGGGAGTCTCCAGAACATAGAGAGCAGTGAGAGTTCCAAAAATGGAAGAAGTGCTTATCAAGCATTGACAGTGGAAGAATATGAAGCTAGAGAATTGAAGAAGCCATCAATTGGAAAAGAGTATTTTAATCATATGAACCTTGAAGCAGTTGTTACAAACTATCCCTACCGAAAAAACTTACCTAAAGAAGATATTCTCAAAGAAAGTCAAATACGACTGGCTCTTATTGATTTTTTGAAAGGGCTTGTTGAATTCGATCCTGCAAAACGCTGGTCACCCTTTCAGGCTTCAAAACACCCTTTTGTAACTGGGGAACCTTTTATACACCCTTACAAGCCTTCTCCTGAGACTCCTCATATGCCAGTAGTTCAAAATATCAAGGTGGATAATCATCCAGGAGGAGGACACTGGTTTGCCGCTGGTCTATCACCTAATGTTCCAGGCAAAAGCAGAGCTTCCCTCTATAGCAGTCCACATTTTCAGATGGTTCAACATCCGCCAGCTAATAGTTATGGCAGTGTTGGAAGTCATGGGAGCTATAATGATAGCGTTGGGCTTGGAAGCAGCTATGGAAGTTATGGAGAGAGCAGTAATATGTTTGCTTACTATTCACCTATTGCTCCATCTGGCATGAACATGCACAATCAGGGAAGTATGTCAATGCTTGGGAATAGTCCGGATGCTAGGAGGAGAGTTAAGTACAAACCTGGGAATGGGCTGGGCATAAGTCCATCAGCTGGAAGTTTTGCTCCCCTGCCCCTTGGTGCCAGCCCATCTCAATTTACTCCACCAAGTTCCTATAGTCAGGTTTCAGTCGGTTCTCCAGGACACTACGGACCTACATCTCCTGCAAGAGGAACTTCTCACGGATCACCTCTAGGCAAGACAGCTGCCGTTAGCCAGTTTAATAGAAGAAAAAATTGGGGACACTCTGGAAGTCCTCAAACTCAAGAAACATTTTCTTCACATTGGCAAGGTCAATATCCTGACAACACAAGCCATACTGAGGGAACATCACAATCTATTGGTAGTTCACCATCATATCTACAGTCAAGTAGTAATCCTGGAAACTGGAAGCAGCGAGGAGGTGGAGGGATATCTACTAATCAGAACATTTCATCATCCTTGATGAAGCCCAGTGCTAATATGAACTCACAATCAACAGAATTGGTTCATGACAATGTGGAGACAGGCATTTCTTTGCCTGATCCTGGTGATTGGGACCCTAATTATAGTGATGAATTACTTCTTCAAGAGGATGGTTCAGATGAAAGCTGTTTGACAACTGAGTTTGACAGAAGTATGAATCTTGGTTCTACTGAAACATGGGCTGGATTTGGAAGGTTCAACCATGTTTCCAGTTCAAACACTCCAATAATCATGCAAAGACTAAATGGACCAAGTCAAGCATTTACTAATGTTGAGATGGGTAGCCTTCCAACGCATGATCTTCAAGCAGCATATGTACCTTCTATGTCTAAGCATTTTCATCTCATGCCTCATGTTATGCAAAATCCTCCAAGTCGTTTTGGACACCAATCTATTCAAAGATTCACACATGGTAGACCTCCCCAGGGTGCTGAGTGGAATCAAATTAAGATTCAGGCTCCTTCTTCTGGTTTCAGCAGTGTGGGCCCTCGTTCTCCCAGGAATAGCTCATTCACCAACAGTATGACATGGGGGCGAAGAATGAATCCTCCTGTTTCAAGCATGCCTCCAACATCCCGAGTAAGAAAAGATTATGCAAGGATTGACTAG	2682	0.4288	MDGVARAEEQAQSTGLAKPSGWLPRGSVFSPCKPKAEEEASAAAAAEKKPLLPPLRVVVRKSKNKRYIVKDLLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKEAGIIHCDLKPENILLCTSSVKPTEIKVIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEILGGQPPDYVLRDAKNTSKFFKCIGSLQNIESSESSKNGRSAYQALTVEEYEARELKKPSIGKEYFNHMNLEAVVTNYPYRKNLPKEDILKESQIRLALIDFLKGLVEFDPAKRWSPFQASKHPFVTGEPFIHPYKPSPETPHMPVVQNIKVDNHPGGGHWFAAGLSPNVPGKSRASLYSSPHFQMVQHPPANSYGSVGSHGSYNDSVGLGSSYGSYGESSNMFAYYSPIAPSGMNMHNQGSMSMLGNSPDARRRVKYKPGNGLGISPSAGSFAPLPLGASPSQFTPPSSYSQVSVGSPGHYGPTSPARGTSHGSPLGKTAAVSQFNRRKNWGHSGSPQTQETFSSHWQGQYPDNTSHTEGTSQSIGSSPSYLQSSSNPGNWKQRGGGGISTNQNISSSLMKPSANMNSQSTELVHDNVETGISLPDPGDWDPNYSDELLLQEDGSDESCLTTEFDRSMNLGSTETWAGFGRFNHVSSSNTPIIMQRLNGPSQAFTNVEMGSLPTHDLQAAYVPSMSKHFHLMPHVMQNPPSRFGHQSIQRFTHGRPPQGAEWNQIKIQAPSSGFSSVGPRSPRNSSFTNSMTWGRRMNPPVSSMPPTSRVRKDYARID	893

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed7g1398	893	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468
	Aed7g1398	893	PANTHER	BNAC04G29850D PROTEIN	63	685	-	-
	Aed7g1398	893	MobiDBLite	consensus disorder prediction	845	880	-	-
	Aed7g1398	893	SMART	serkin_6	67	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed7g1398	893	Gene3D	Phosphorylase Kinase; domain 1	53	147	-	-
	Aed7g1398	893	MobiDBLite	consensus disorder prediction	567	584	-	-
	Aed7g1398	893	ProSitePatterns	Protein kinases ATP-binding region signature.	73	96	IPR017441	GO:0005524
	Aed7g1398	893	CDD	PKc_YAK1	67	410	-	-
	Aed7g1398	893	MobiDBLite	consensus disorder prediction	1	25	-	-
	Aed7g1398	893	MobiDBLite	consensus disorder prediction	562	695	-	-
	Aed7g1398	893	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	63	685	-	-
	Aed7g1398	893	ProSiteProfiles	Protein kinase domain profile.	67	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed7g1398	893	Pfam	Protein kinase domain	68	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed7g1398	893	MobiDBLite	consensus disorder prediction	525	548	-	-
	Aed7g1398	893	Gene3D	Transferase(Phosphotransferase) domain 1	148	411	-	-
	Aed7g1398	893	SUPERFAMILY	Protein kinase-like (PK-like)	59	432	IPR011009	-
	Aed7g1398	893	MobiDBLite	consensus disorder prediction	592	695	-	-
	Aed7g1398	893	MobiDBLite	consensus disorder prediction	845	893	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed7g1398	Aed-Chr7	12756707	12774629	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed7g1398	66	296	MAP Kinase Gene Family	AT1G18150	34.146	3.51e-31	128

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Aed7g1398		Pkinase	2.8e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed7g1398	K18670		-	gmx:100792777	1616.67