Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1392 ATGGTTGGAGGTGTTATTCGGCAGTTATTTAGGAGGAAACTCCAATCACATTATCATAATTCTTCATTTAAGTCATCCATTATCACAAAGACAGATGGTGCTGATACTACAGGTTGCAACTCCTTAAGAGTGCTTGCATTAATTGGAGCTGGGGTCTCCGGTTTTTTAGGTTTTGCAACAACCGCATTTGCTGATGAAGCTGAGCATGGCCTGGCATGTCCAACCTATCCATGGCCTCACACGGGCATCCTCAGTTCCTACGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATCAAGAAGTCTGTGCTTCTTGTCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTATACAGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGTTGATGGCCCTAATGATGAGGGTGAGATGTTTACACGCCCTGGTAAACTCAGTGATCGCTTTCCTCAGCCTTATGCAAATGAAGCAGCTGCTAGGTTTGCTAATGGAGGAGCCTATCCTCCTGATCTAAGTCTTGTTACCAAAGCTCGTCACAATGGTCAGAACTATGTGTTTGCACTTTTAACCGGTTATCGTGACCCTCCATCTGGTGTTTCAATTAGAGAAGGACTGCACTATAATCCTTATTTTCCTGGCGGGGCCATTGCTATGCCTAAAATGCTTAATGATGGTGCTCTTGAATATGAAGATGGTACCCCTGCTACAGAATCTCAGATGGGATTTAAATGGATATTTGTTCTATCATTGGCATTGCTTCAAGCTGCGTATTACCGTCGCCTCCGGTGGTCTGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAG 858 0.4406 MVGGVIRQLFRRKLQSHYHNSSFKSSIITKTDGADTTGCNSLRVLALIGAGVSGFLGFATTAFADEAEHGLACPTYPWPHTGILSSYDHASIRRGHQVYQEVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEAAARFANGGAYPPDLSLVTKARHNGQNYVFALLTGYRDPPSGVSIREGLHYNPYFPGGAIAMPKMLNDGALEYEDGTPATESQMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1392 285 Gene3D - 67 248 IPR036909 GO:0009055|GO:0020037
Aed7g1392 285 ProSiteProfiles Cytochrome c family profile. 90 197 IPR009056 GO:0009055|GO:0020037
Aed7g1392 285 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 13 249 - -
Aed7g1392 285 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 248 285 - -
Aed7g1392 285 SUPERFAMILY Cytochrome c 71 250 IPR036909 GO:0009055|GO:0020037
Aed7g1392 285 Gene3D - 249 284 - -
Aed7g1392 285 PANTHER CYTOCHROME C1 13 249 IPR002326 GO:0009055|GO:0020037
Aed7g1392 285 PANTHER CYTOCHROME C1 248 285 IPR002326 GO:0009055|GO:0020037
Aed7g1392 285 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 246 284 IPR021157 -
Aed7g1392 285 Pfam Cytochrome C1 family 78 249 IPR002326 GO:0009055|GO:0020037
Aed7g1392 285 PRINTS Cytochrome C1 signature 141 161 IPR002326 GO:0009055|GO:0020037
Aed7g1392 285 PRINTS Cytochrome C1 signature 212 223 IPR002326 GO:0009055|GO:0020037
Aed7g1392 285 PRINTS Cytochrome C1 signature 96 115 IPR002326 GO:0009055|GO:0020037
Aed7g1392 285 PRINTS Cytochrome C1 signature 76 95 IPR002326 GO:0009055|GO:0020037
Aed7g1392 285 PRINTS Cytochrome C1 signature 223 242 IPR002326 GO:0009055|GO:0020037
Aed7g1392 285 PRINTS Cytochrome C1 signature 174 198 IPR002326 GO:0009055|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1392 Aed-Chr7 12468496 12476428 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1392 3 285 Chloroplast and Mitochondria Gene Families AT3G27240 76.066 5.50e-153 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1392 K00413 - gmx:100803087 535.028