Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1391 ATGGAAGAAGAAGAAGATCAAGGGTCAGAGGCCGTTAACAACAACAATGAGCATCGTTCTTCTTGGATGTGTAATATCTGCAAGAAAGGGTTCGGTTCAGGTAAAGCCCTCGGTGGACATATGAGAATACACAACCTTTCTAAGAAGCTGAAGCAGGTTCAGGTTCATAGGGCCAAACAAGGCACTAGTGTTGCAGCAAAACCCAAACCCAAACCCAACAACAAATGGGTGTTGGTGAGTGGCAACCCAACTTGTTCCCTTTGTGGGAAGAGCTTTTCTTCCATGAAGTCCTTGTTTGGGCACTTGAGGTCTCACTCTGAGAGGGTTAGAAGAGGAATAACTCAGAATAACAACAACACTGCATCCTCCAATTCCACATCTTCATCAACCCTCTCTGATGACTACTCTGCTGTTGCTGATCTCTCTCAAGCCCTCAGGGGTTGGTCTGTGACTGCCAAGAGGGGCTTACGCGGAAGCCCCTCTTGTAGCAAATCGAATTCCGGTTTGGAAGACGGCGGTGAGGAGGAGGAGGAGATCGAGCCGCGGATGCAAGAGGCTGTGTATGAGCTCATGCTGCTGGCTAGTGGGAATCCCAAGTGGGTGGAAGGGCTAGATGATCAGATTGAAGAGGAGCAGCTTTTAAACCCGGTTTTTGGGGATTCTGATGAGATGATGAAGATCAAGAAGAAGAGAGTGACTAAGAAACTGAAATTAACAGAACTAGAATCAGCTGCTGAGGAGGGGGAAAACAAAAACAAGAACGAGTTGGTTAGATGCAGAATATGCAACACAACTTTCCTAAGTCATCATGCTCTTGAGGGTCATCTATGCAGTTTTGATGAAATTTCTAAGGATGGACCTGAATCAGCCACAAAAGAGGAGCATCATGCCAAAACAACAACAACCCAGCAAGGGTATGAGGGTGAACTTTTCAACAAGACTTTCTCAACTGGCCAAGTCTTTGGGGGCCACATGAGATCTAATTGGACCAGCATGGTGGCAGAGTCAGCTCAAGCAACTTCCTCAGCAGTGAAAAATGCTTTGAAATGTTCCAAGATTTGGAGTTTTGATCTTAATCATCTTCCTGCCATGGATGGGGAAGAGGGTGTTCAATCAGACTTATGA 1125 0.4613 MEEEEDQGSEAVNNNNEHRSSWMCNICKKGFGSGKALGGHMRIHNLSKKLKQVQVHRAKQGTSVAAKPKPKPNNKWVLVSGNPTCSLCGKSFSSMKSLFGHLRSHSERVRRGITQNNNNTASSNSTSSSTLSDDYSAVADLSQALRGWSVTAKRGLRGSPSCSKSNSGLEDGGEEEEEIEPRMQEAVYELMLLASGNPKWVEGLDDQIEEEQLLNPVFGDSDEMMKIKKKRVTKKLKLTELESAAEEGENKNKNELVRCRICNTTFLSHHALEGHLCSFDEISKDGPESATKEEHHAKTTTTQQGYEGELFNKTFSTGQVFGGHMRSNWTSMVAESAQATSSAVKNALKCSKIWSFDLNHLPAMDGEEGVQSDL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1391 374 Coils Coil 238 258 - -
Aed7g1391 374 SMART c2h2final6 22 44 IPR013087 -
Aed7g1391 374 SMART c2h2final6 83 105 IPR013087 -
Aed7g1391 374 SMART c2h2final6 257 277 IPR013087 -
Aed7g1391 374 Gene3D Classic Zinc Finger 84 139 - -
Aed7g1391 374 Gene3D Classic Zinc Finger 9 75 - -
Aed7g1391 374 Pfam C2H2-type zinc finger 85 106 - -
Aed7g1391 374 Pfam C2H2-type zinc finger 24 44 - -
Aed7g1391 374 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 292 367 - -
Aed7g1391 374 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 4 287 - -
Aed7g1391 374 SUPERFAMILY beta-beta-alpha zinc fingers 22 105 IPR036236 -
Aed7g1391 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Aed7g1391 374 MobiDBLite consensus disorder prediction 285 300 - -
Aed7g1391 374 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Aed7g1391 374 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Aed7g1391 374 MobiDBLite consensus disorder prediction 154 180 - -
Aed7g1391 374 MobiDBLite consensus disorder prediction 285 304 - -
Aed7g1391 374 MobiDBLite consensus disorder prediction 112 132 - -
Aed7g1391 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 49 IPR013087 -
Aed7g1391 374 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 292 367 IPR044653 GO:0003700
Aed7g1391 374 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 4 287 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1391 Aed-Chr7 12428452 12429576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1391 23 113 C2H2 Transcription Factor Family AT2G26940 40.000 6.94e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed7g1391 zf-C2H2_6 8.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1391 - - gmx:102667003 394.815