Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1390 ATGGATCCTGGTCGCTATGCTCTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGATACCCCGCTGCCCACGACCCCAACTTCCGGGTTGGTGGTTCCTATGATGAAAGAAGGTTTATAGATGAAAGATATCCAAGGGATGCTGTTTACCAGAGAAATAATTTCCAACGTGACATTTTAGATAGGGAGGCCTATTTGCCGCCAGGACCTCCTGTTGGCCACTGGAGTCAATCCAAACGGAGAGGTTATGATGAAGATTATCCACTTGACAGGGAATCTAGACGTTTTCAGAGACCCTATCATGAATCATATAATCAGATTGATGGTTTCAGGGATCGTGAGGTTGACACATACCCAGAATATGAAAGGTTTCGGGATGGCTATACTGGCATTGAAAACTATGGTGATCGAGGATATGATAAACCTGCCAGGTTTGTAGGACATGACCGTGATGATTATGCATATGATGATTATGACTACAAGTCCCGAGCATCCTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCAACATAGTTATGATTCTGATTATGAAAGAGGAGGTAGTAGAAGAGATAGCAATTGGAAGCGACGCGAATCACGTGATCGGGAACGGGATAAGAGTGGTCATAGTCGGGAAAGAGATCTGAGTCCACATAGGAGACATGAGCGTTCTCGTTCACATTCTCATTCTCCATCTCGTTCACGTTCTCGATCCAGGTCTCATTCCCATTCCCATTCTCATTCCCGATCTCAATCTCGTGGGTACGATGACCATCCAAGATCTAGGTCCCCTCGAGGTCGAAGCCATGGTCGAAGTTATAGGGAAGATAGCTATACTGACAGTCGATATGACAAAAGTGAAAGACGTAGGGATCGTGATGATAAACGTCAGCGGGAGCATTATTCTGTGGCCCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCTTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGACAAACTGGGAGAAGATGGTCTTGTGGTGGATGGCAGAAAACTTTTCTTTGAATATAGTAGTAAGCCTACTGGAGGTCCTGGTCCAGATGGAGCTATGAAATCAGGTCATAATTATAAGAGCATTACAGTTCCATCTGATTGGATGTGCACTGTATGTAGCTACATAAATTTTGCACGCCGGACTTCGTGTTATCAGTGTAATGAGCCACGGACTGATGATGCTCCTGCAGCAGATATTTCATTGTCAAATTCAGCGGCTATAGGAAAGAAAGGTTCAGAGGCAGGTCCAACTCATGTCTTGGTTGTCCGTGGCTTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCTAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACAAATGGAACTATGCTTGAAAAGAATGGGCAGATTCTAAGAGTGGCCTATGCAAAAAGCATCCTGGGCCCTGGATCGGGAACATCGGGAACTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCAACATTTGCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATACAATCCCGATGACAAACAATCTACTGGTCCAGCGCAAACTGGCACAGACGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCGGGTTATTACTATGATGCTGCTTCTGGGTTCTACTATGATGGAAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCAAACTCAGCAGTACATGCCTTGCACTGATCAAAATCAGAATAAAACATCTAATAATGAGTCTGAACCTTCTAAGGCATCCGATGGTTCTGGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTGCATCGGTTGAGAAGCCAGCTTCATTGGCAGATGCTGTCCAGGCTGCAGCAGCTGCTGCTTTAGCTGCAGAGAAGAAAGAAAAAGAAAAATCAAAGGAAATAAAACTTGCCTCAAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAAAGGAGCCACGAGGGGCAGGCTACTCAAGTGGCTCTGGAAGACAGTCAGCCTTCTGTTTCAGCTGATGATAGGTCATATTCTTCTGGACATTCTGCAAAGAACAAGTTAAAAAATGAGACTATGCTAAGGGAAAGTAATGCTTCTAATCCAGGAAGTCACACAACTCTTGCCCAGGTTGCTGCTATTGATTCTCAGGTACAGCCACGGCCTGTTAGTAATAGCCTTGGAGGCACTGTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGATTGTTAAATCAGATACTTATTCAGGTTCTACATCTGTTGCATCACCTATGCCTAGTTTATCTTCAGCAAATGTTGATGCACAGACAGTTGCCACTCCCTTTAGAACAGATGTATCTGCCCTGGGTTCATATACACCATCTGCAACTGTTGGAAGTGGCCGAAGAAGGTTTTCAGAAATGCCTCATTCTGGTTCAACTCACAAGGAACAACCTCAAACTACTTATAGGGACCGTGCAGCTGAGAGGAGGAGTTTGTATGGCTCATCATCTTCAGCTGGAAATGATTTAGCTGACCTTGACATTGGGGATTCAAATCGAGATTTTGCATCAAGGAAGGGCGATCCCATGCCATTCCCTCCCGGGGTTGGTGGAGGACGCATAATTGGAGAGGCCAACCTTGATACTTTTGAGGTGATTACATCAGACAAAGCAATTGATGAAAACAACGTCGGTAATCGGATGCTTCGCAACATGGGCTGGCAGGAAGGATTGGGACTAGGAAAGGATGGAAGTGGAATGACAGAGCCTGTCCTGGCACAAGCCACGGAACATAGGGCAGGACTTGGGAGTCAACAGAAGAAGTTGGATCCTAGCCTAGAAGTGCAGGCAGGGGACAGTTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAGATGTCAGAGAGTTAA 3207 0.4512 MDPGRYALHQGWDNNSALEGYPAAHDPNFRVGGSYDERRFIDERYPRDAVYQRNNFQRDILDREAYLPPGPPVGHWSQSKRRGYDEDYPLDRESRRFQRPYHESYNQIDGFRDREVDTYPEYERFRDGYTGIENYGDRGYDKPARFVGHDRDDYAYDDYDYKSRASSHHRREDSHERDYDHGQHSYDSDYERGGSRRDSNWKRRESRDRERDKSGHSRERDLSPHRRHERSRSHSHSPSRSRSRSRSHSHSHSHSRSQSRGYDDHPRSRSPRGRSHGRSYREDSYTDSRYDKSERRRDRDDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGFSRGFAFIDFPSVGAAQGMMDKLGEDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNYKSITVPSDWMCTVCSYINFARRTSCYQCNEPRTDDAPAADISLSNSAAIGKKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTMLEKNGQILRVAYAKSILGPGSGTSGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSTGPAQTGTDVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTQQYMPCTDQNQNKTSNNESEPSKASDGSGKKVISAPATTVASVEKPASLADAVQAAAAAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATQVALEDSQPSVSADDRSYSSGHSAKNKLKNETMLRESNASNPGSHTTLAQVAAIDSQVQPRPVSNSLGGTVMGVIRGSGRGIVKSDTYSGSTSVASPMPSLSSANVDAQTVATPFRTDVSALGSYTPSATVGSGRRRFSEMPHSGSTHKEQPQTTYRDRAAERRSLYGSSSSAGNDLADLDIGDSNRDFASRKGDPMPFPPGVGGGRIIGEANLDTFEVITSDKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMTEPVLAQATEHRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMSES 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1390 1068 MobiDBLite consensus disorder prediction 662 687 - -
Aed7g1390 1068 MobiDBLite consensus disorder prediction 256 308 - -
Aed7g1390 1068 PANTHER RNA-BINDING PROTEIN 224 1065 - -
Aed7g1390 1068 SMART zf_4 418 442 IPR001876 -
Aed7g1390 1068 MobiDBLite consensus disorder prediction 62 85 - -
Aed7g1390 1068 CDD RRM1_RRM2_RBM5_like 469 549 - -
Aed7g1390 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 394 IPR000504 GO:0003723
Aed7g1390 1068 MobiDBLite consensus disorder prediction 759 792 - -
Aed7g1390 1068 Pfam G-patch domain 991 1032 IPR000467 GO:0003676
Aed7g1390 1068 PANTHER RNA-BINDING PROTEIN 38 214 - -
Aed7g1390 1068 SMART rrm1_1 315 390 IPR000504 GO:0003723
Aed7g1390 1068 SMART rrm1_1 472 547 IPR000504 GO:0003723
Aed7g1390 1068 PANTHER FI21118P1 38 214 - -
Aed7g1390 1068 PANTHER FI21118P1 224 1065 - -
Aed7g1390 1068 CDD RRM1_RRM2_RBM5_like 312 392 - -
Aed7g1390 1068 Gene3D - 279 413 IPR012677 -
Aed7g1390 1068 Gene3D - 455 583 IPR012677 -
Aed7g1390 1068 SMART G-patch_5 988 1034 IPR000467 GO:0003676
Aed7g1390 1068 MobiDBLite consensus disorder prediction 883 962 - -
Aed7g1390 1068 MobiDBLite consensus disorder prediction 163 311 - -
Aed7g1390 1068 MobiDBLite consensus disorder prediction 229 255 - -
Aed7g1390 1068 Pfam OCRE domain 613 661 IPR041591 -
Aed7g1390 1068 ProSitePatterns Zinc finger RanBP2-type signature. 420 439 IPR001876 -
Aed7g1390 1068 ProSiteProfiles G-patch domain profile. 990 1036 IPR000467 GO:0003676
Aed7g1390 1068 Gene3D - 414 446 - -
Aed7g1390 1068 CDD OCRE_SUA_like 610 662 IPR035623 -
Aed7g1390 1068 MobiDBLite consensus disorder prediction 163 228 - -
Aed7g1390 1068 SUPERFAMILY Ran binding protein zinc finger-like 411 446 IPR036443 -
Aed7g1390 1068 MobiDBLite consensus disorder prediction 662 679 - -
Aed7g1390 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 471 551 IPR000504 GO:0003723
Aed7g1390 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 473 539 IPR000504 GO:0003723
Aed7g1390 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 376 IPR000504 GO:0003723
Aed7g1390 1068 SUPERFAMILY RNA-binding domain, RBD 303 399 IPR035979 GO:0003676
Aed7g1390 1068 SUPERFAMILY RNA-binding domain, RBD 469 558 IPR035979 GO:0003676
Aed7g1390 1068 MobiDBLite consensus disorder prediction 597 611 - -
Aed7g1390 1068 MobiDBLite consensus disorder prediction 589 612 - -
Aed7g1390 1068 ProSiteProfiles Zinc finger RanBP2 type profile. 416 445 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1390 Aed-Chr7 12372978 12381436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1390 313 535 Eukaryotic Initiation Factors Gene Family AT2G36660 25.600 3.89e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1390 K13094 - gmx:100777686 1854.72