LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed7g1372	ATGGAGAAAACAAGGCCCTCAGACCAAGTTGTTCTCTTCATCGACCAACATAACCCTAAACCACCATCCTCCTTGGAAACCGAAAACCACCATCAAGATAATCTTCATAAACAACCCAAACACCCCTCAAAGGTAAGAACCCTAAACCGTCTCAGCTTCTCGAAACCTAAATCCCGAATCCTAGAGTACAATTATAATAACGTCCCTCGCAACAAAGTTGCAATATCCGAAGAAGGTGACGATTTTATCCAACCCACCTATAAGCCCTCTTTTGACGATAATGATGATGACAACGACGATTGGGAGTGGCACGAGAAGGATACGGAGGAGGACGGGTCAGAGCATGGCCCAAAGCTACACCAGAAGAGGAAGCTCAAGATCAAGTGGAGGCTTATGATGGAGTGGGCTTTGTTCCTCAACATATTGACTTGCTTGGTGTGTTCTTTGACCATATCTTCCATAACCAACATGCACCTTTTGGGGTTGGAGATTTGGAGGTGGTGTTTGATGGTAATGGTCACATTCAGTGGCCGTTTGGTTTCGGGGTGGCTGGTAGGTCTAACAGTGTTCATCATCGAGCGAAACTTCATGCTCCGAGAGAAGGTTCTGTACTTCATCTATGGCCTCCGTAAGAGCATAAGAAACTGCATGTGGCTCGGCCTGGTGCTCCTCTCCTACTGGAGCGTGGTTTTCGACGACGTCCAGAAGAAGAACCACAAGTTCCTGAACAAGGTCTTCCAAGCCCTAGTGGCGGTCCTAGTCGGCCTAACAATCTGGCTCGTGAAGATAGTCTTGGTGAAGATGCTCGCCTCCTCCTTCCACGTCACCACCTACTTCGACCGCATGAAGGAGAGCGTCTTCCATCACTACATCCTCGACGCGCTGTCGGGGCCCCCAATGGAAGACGCCGAGGAGCTGCTGCGGCAGCACCACCTCGCGGGCTCCAAGTCGATGCCCGCCAGGTGGAAGACGAAGGAGGGGGACGCTAAGAGGTTCGGGTCGAGGAGGATTGACATGGAGAAGCTCAGGAAGCTCAGCTTGGAGAGCTCGGCTTCGGCGTGGAGCGTGAAGAGGCTTGTTAACTATGTTAGGTCTTCTGGGTTATCCACTATTTCGAGGACTGTGGATGATTTTGGGAACGCTGAGTCGGAGATTGGTAGTGAGTGGGAGGCTAGGAACTGTGCTCAGAGGATTTTCAAGAACGTTGCCAAACCTGATGCCAAGTATATTGAAGAGGAGGATCTGATGAGATTTTTGAAGAGGGTTGAGATACACACCATATTTCCACTCTTTGAAGGGGCTCTTGAAACGGGACAGATCAGCAGGTCTTCGTTTAGAAATTGGGTGATTCGAGCATATTATGAACGAAAAGCTCTAGCACAATCACTGAACGATACAAAAACAGCAGTGCAGCAGCTTCACAAAATAGCAAGTGCAGTTGTGAGTGTGATAATAATAATAGTGATGCTGTTGCTGATGGAAGTGGCCACGCTGAAGATAATACTATTCTGCATTACACAAACTGTTTTGATTGGTGTTGCCTTCCAAGGCACTTGCAAGACTGTGTTGGAGGCCATCATCTTTGTCTTCGTCATGCACCCTTTTGATATTGGAGACAGATGCGTCATTGATGGAGTTCATATGATTGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGATATGACAATGAGAAGATATATTACCCTAACGCAGTTTTACTCACTAAACCTATAAGCAATTTCTATAGGAGTCCAGAGATGTGGGATTCAATTGATTTCACCATGGATGTTTCTACTTCTATGGAGACCATTCTTGCACTCAAGAAATCAATACAAAGAGGGAACCTCTGGATTCCACCTCTTCCCGTCCTTCGTGACGGTCCTCTTCCTTCTCTTCAGGGTGATCCAGGTTTGAATCTTAAGGTTCCTGATATATTTTTTGAGACATGGAAGGAATTTGTTTCTTGCCAAGTTGCACCCAGAATTGGTTGCTTTCAATCCAAGTGCTTGACCGCCAATTCTTCGTCCATGGAGATTTTCTTCTGGTTTCCTTTCACAGTGTACTTAATGCTTGTTTCTTCTGTGACTAGTGCTGCATCTTTAGGGAACATATACAAAGAATTGACGGTAGAATTGGCTGGACCATCTAATATCTGTTTACCCTTTTCTTGGCATCGTCTGCTAGAGATAAATGCCATCTATCTTTTTTTTGTTTGCAATTGCTTTTTGAATAAGAGCTGCATTGGGTTCTGTGGGAAAATGGAGAGGTACAAGTTAATTAAGGAAGTTGGTGATGGAACATTTGGGACTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTGTCGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTTAGAGAAGTCAAGTCATTACGAAAAATGAATCATCCAAATATTGTGAAGCTGAAGGAAGTTATACGAGAATGTGACACACTGTGCCTTGTTTTTGAGTACATGGAATACAATCTGTACCAACTTATGAAAAATAGGGAAAAGCTGTTTTCCGAAAATGAAGTTAGAAACTGGTGTTTTCAAGTTTTCCAAGGTTTAGCTTACATGCACCGGCGTGGATACTTTCATCGTGATCTGAAGCCTGAAAACTTGCTGGTCACCAAGGATTTCATCAAGGTTGCTGATTTTGGCCTAGCCCGAGAGATCATCCTTAGGACAAACCCGTCCGCCGCCTCCAATGAAGGCCGGAGTCAATTGGATTTCCGAATCTGGAAACTTCATGCTCAGGTCCGGACAACAACAAATTCCAACAGAAAGAACTTTGACAAGAAAAGTTGCCGGGTGAGATGA	2856	0.4503	MEKTRPSDQVVLFIDQHNPKPPSSLETENHHQDNLHKQPKHPSKVRTLNRLSFSKPKSRILEYNYNNVPRNKVAISEEGDDFIQPTYKPSFDDNDDDNDDWEWHEKDTEEDGSEHGPKLHQKRKLKIKWRLMMEWALFLNILTCLVCSLTISSITNMHLLGLEIWRWCLMVMVTFSGRLVSGWLVGLTVFIIERNFMLREKVLYFIYGLRKSIRNCMWLGLVLLSYWSVVFDDVQKKNHKFLNKVFQALVAVLVGLTIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYILDALSGPPMEDAEELLRQHHLAGSKSMPARWKTKEGDAKRFGSRRIDMEKLRKLSLESSASAWSVKRLVNYVRSSGLSTISRTVDDFGNAESEIGSEWEARNCAQRIFKNVAKPDAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGQISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAVVSVIIIIVMLLLMEVATLKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILTTVFLRYDNEKIYYPNAVLLTKPISNFYRSPEMWDSIDFTMDVSTSMETILALKKSIQRGNLWIPPLPVLRDGPLPSLQGDPGLNLKVPDIFFETWKEFVSCQVAPRIGCFQSKCLTANSSSMEIFFWFPFTVYLMLVSSVTSAASLGNIYKELTVELAGPSNICLPFSWHRLLEINAIYLFFVCNCFLNKSCIGFCGKMERYKLIKEVGDGTFGTVWRAINKQSGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRECDTLCLVFEYMEYNLYQLMKNREKLFSENEVRNWCFQVFQGLAYMHRRGYFHRDLKPENLLVTKDFIKVADFGLAREIILRTNPSAASNEGRSQLDFRIWKLHAQVRTTTNSNRKNFDKKSCRVR	951

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed7g1372	951	MobiDBLite	consensus disorder prediction	93	107	-	-
	Aed7g1372	951	MobiDBLite	consensus disorder prediction	24	40	-	-
	Aed7g1372	951	Gene3D	Phosphorylase Kinase; domain 1	755	834	-	-
	Aed7g1372	951	ProSiteProfiles	Protein kinase domain profile.	759	951	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed7g1372	951	Pfam	Protein kinase domain	759	907	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed7g1372	951	Gene3D	-	534	583	IPR023408	-
	Aed7g1372	951	SUPERFAMILY	Sm-like ribonucleoproteins	525	583	IPR010920	-
	Aed7g1372	951	SUPERFAMILY	Protein kinase-like (PK-like)	752	905	IPR011009	-
	Aed7g1372	951	ProSitePatterns	Protein kinases ATP-binding region signature.	765	789	IPR017441	GO:0005524
	Aed7g1372	951	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN	4	614	-	-
	Aed7g1372	951	Pfam	Mechanosensitive ion channel	475	612	IPR006685	GO:0016020\|GO:0055085
	Aed7g1372	951	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	4	614	IPR016688	-
	Aed7g1372	951	Gene3D	Transferase(Phosphotransferase) domain 1	835	935	-	-
	Aed7g1372	951	MobiDBLite	consensus disorder prediction	83	117	-	-
	Aed7g1372	951	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	876	888	IPR008271	GO:0004672\|GO:0006468
	Aed7g1372	951	MobiDBLite	consensus disorder prediction	1	49	-	-
	Aed7g1372	951	SMART	serkin_6	759	941	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed7g1372	Aed-Chr7	11980688	12001302	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed7g1372	6	621	Mechanosensitive Ion Channel Family	AT5G12080	42.481	9.72e-158	480

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_RCK	Aed7g1372		Pkinase	7.8e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed7g1372	K22048		-	gmx:100813521	1055.05