Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1352 ATGGGTTCGAGTGGTAGCAAAGCCACTTCTTCTTCATCGTCTTCTTCTTCGGGGAGTTTAAGGAAGGGTCGTCGATCTAAGGGCCTTAAAGTTTTTCAATCTTATTATTGTCTTGGAACTTCTTCTGGTTCTCATGACAGTGATAATGAAGACCAGGTTTGTGATCAGAATAAAATAAATGGCAATGAGGTTACATATGCCAATGGCAATGGAGCAGACTCAGATGAGGTGAAAACAGGGTCATTTAGAAAGGTTAAAGCTGGTGAAATGACTCGTATGCCTTCTAACATTGACCTTGATGGATGGGGTGAAACAAGCATCCCCAACACTTCATCCAGAACTGGTAGCAGCTCTCTCCATTCTTCTTCAACTCATTCATTGAACCCTACAAGTCATTTCCTTTCTCGGTTTAGCCTCATTCCTGGTAGTGTAAGCTTCAGACTTAGCAGAACCACCAGTTTGGGGTCATCAAGGCCTTCCTGTCCTGTTTCTTCTGCTAGTCTCTCGATATTTAACAATGAAGATGAGCATAGTCTCCATCCTGGACCTCCTGGAAGTTTGATTAACAGAAGCGAAACACAACAATGTAGTAACTTGCTCCCTGCATCTTTTTTCAATCAAATACATCCACAGTGTCATGAAGATGCTTCTAATAATTCAAGGTCAAATGTCCTGACATCAGGTGTACTTGAAAACTTGCAGAGTGATCCCACAGATGGGGTTCTAATAAGAGAAAGGCCAGATGTGAGTTTGTTTTCTCCGAGAATTCAAACAGAAACAGAAAATGTTGACACTAGACATGTTGATCGACGGAATGGTGCTCGAGAACCAGCTGAACGGAATAGTCATTTTAGCCGAACATTAAGTGTTGGAAGGCTTCGTGAAAGAGTTCTTCGTCAATCAACTTTATCCGACCTCACCTTTTTCCGTTCACAACAAGAGACAGAGCTGAGAGATGCTAGCCTGCCTGGCCAGGATATGGACAGGCAAGCAGTGGTAGGAGATTCGAGAGTGTCACCATCTGATCATAGTACCATTAATTCTTCAACATCTAGATATCCTCCATCTAGTATGTCTAACTCCATGTTTAGCATCCAAGACTATGAAGTTCGTGCTCTTCAGCGATTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGATAGATCGTGTATATTGTCTGATCAACATAGAATTGGTCGTTGTACATGCCGAAACAGTAATCGTGAAACTAATTCAAATGATGATACTGGTGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTTGTTTTATCTTCCCGTCCATCTGTATCTTCTATTGGATCTGTTCCTGCACCTAATGATGTTGTCAATTCCTTGCCTGTCAAGTTATATGAGAAGTTGCATAAGCATCAAGAGGATGCTGCACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAACATGCGAGTACTGCCGTGCCATCATGAATTTCATAGGACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGTCCACTTTGTCGAGGGGACATATGCATATCCTATCCAACTCCAACAGAGAACTTGAGTGGCGGCTAG 1638 0.4231 MGSSGSKATSSSSSSSSGSLRKGRRSKGLKVFQSYYCLGTSSGSHDSDNEDQVCDQNKINGNEVTYANGNGADSDEVKTGSFRKVKAGEMTRMPSNIDLDGWGETSIPNTSSRTGSSSLHSSSTHSLNPTSHFLSRFSLIPGSVSFRLSRTTSLGSSRPSCPVSSASLSIFNNEDEHSLHPGPPGSLINRSETQQCSNLLPASFFNQIHPQCHEDASNNSRSNVLTSGVLENLQSDPTDGVLIRERPDVSLFSPRIQTETENVDTRHVDRRNGAREPAERNSHFSRTLSVGRLRERVLRQSTLSDLTFFRSQQETELRDASLPGQDMDRQAVVGDSRVSPSDHSTINSSTSRYPPSSMSNSMFSIQDYEVRALQRLGSRFENLSGHDRSCILSDQHRIGRCTCRNSNRETNSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNDVVNSLPVKLYEKLHKHQEDAAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGDICISYPTPTENLSGG 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1352 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 532 IPR013083 -
Aed7g1352 545 MobiDBLite consensus disorder prediction 95 125 - -
Aed7g1352 545 ProSiteProfiles Zinc finger RING-type profile. 486 528 IPR001841 -
Aed7g1352 545 MobiDBLite consensus disorder prediction 337 358 - -
Aed7g1352 545 MobiDBLite consensus disorder prediction 334 358 - -
Aed7g1352 545 MobiDBLite consensus disorder prediction 102 125 - -
Aed7g1352 545 CDD RING-H2_PA-TM-RING 485 528 - -
Aed7g1352 545 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 370 543 - -
Aed7g1352 545 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 370 - -
Aed7g1352 545 Pfam Ring finger domain 485 528 IPR001841 -
Aed7g1352 545 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 370 543 - -
Aed7g1352 545 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 370 - -
Aed7g1352 545 MobiDBLite consensus disorder prediction 1 26 - -
Aed7g1352 545 SMART ring_2 486 527 IPR001841 -
Aed7g1352 545 MobiDBLite consensus disorder prediction 1 22 - -
Aed7g1352 545 SUPERFAMILY RING/U-box 464 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1352 Aed-Chr7 11543662 11549644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1352 46 537 C3H Transcription Factor Family AT5G45290 42.486 1.10e-96 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1352 - - gmx:100800896 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1352 7 11543662 11549644 Aed7g1352 7 11543662 11549644 ECH