Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1320 ATGAGTGATGCAAAAGAGAATGAGGAAGCAGCACAGAATTTACCATTGGCTGTGGAAGAAACTCAGCAGTTGGTTGAAGCACAGGTTCAACCAGAAGATTTGGCTGCTCCCGTGTCCATAGGGGATGCTTCAAATGATGTTGAAAATGGGAAGGCAGAGGTGAAGGCACCTGTGGAGGATAAAAATGTGAAACCAGAAGCCAATTCAGAGTCCATTCCACAACAAGACGTCGTAAATAGTGAAAATACTCTTCACTCAGTCCCTGTAGTGGACAATGTTCAAGTTTTGAATGAAACAGAAGGCGGATATGCGGCAGATGTGAAGAGCAAAGTTGAAGAAGTTCCGCGGTGTGATAAGGGCACCGAGAATGATGTTTGTCAAATCAAAGCTGATACTGCTGAAACGACTGTGGTGGTGAATAGTCCCAAAGCTTTTGAAGTGGCTGATGGTAAAACTTGTGATAATGGTGACTCCAACTCCATATGCCCTAGTCATAGTGAGCCTAGTACACCGCATGCCGTTCCTGCCGATATAAGAGCTGAAATCAAGAGTGGATTCGACAATGAGAATACGGATAGTGAAAAGCTGGCTGTTGTTGCACATGCAGATAATGGAAATTCAATCTCAAAGAACTTGTACTTTTTGGATCCTGACGATTCATATGATGGTAATGAGTCAGGAACAGAAGAGGAGCAATCAGCTTTTATGAAGGAGCTTGAAAATTTCTTCAGGGAGAGGAGCATGGAATTCAAACCACCCAAGTTCTATAAAGAGGAGCTTAATTGCCTTAAGTTATGGAGATCTGTAAACAAATTGGGCGGCTATGATAAGGTTACCTCATGTAAATTGTGGCGGCAAGTGGGAGAGTCCTTTAAACCCCCAAAGACATGCACCACAGTTTCATGGACTTTTCGGGTTTTTTATGAGAAGGCACTTCTTGACTATGAAAGGCATACAACAAATGGTGGTGAGTTGAATGTGCCTATTACTCCTCATTCAGAGCCAATACATATTGAAAATCAGGTAGTATTTAATTTAGGCTTTGCAAGTGGAGCTATGTGTGTTATAAGTAGTAGTAGTAGTACAACTGGGATAGCTATACTTATTTGTGTCTCAGAATCCCTTTTGCCTGTTCAGTCTGTCCAGGGTTCAGCATCAGGTAGGGCACGGAGAGATGCTGCAGCAAGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTTGGCAATGGTGAATATAGCGATCCTATTATTAAGGATAGGAATTCTTTGTCTACACAAAAGCGTGAAAAGCAGCTTAAAAACATCAATTTACTTAAACGCAAGAAATCATCAGACACAGTTAATGCTGTCAAAGTGGCACACAGTAAACCATCCAGACCACAGTTAAGACATATGTTACCTTATTTCTCTTTTCATCATGAGTGCTGTAAAGATTGTTTTGAGGTCTATGCTCTAGTTCCTGGCCTTCTGCGGGAAGAGGTGCGTGTTCAATCAGACCCAGCTGGACGCTTGGTCATAAGTGGTGAGCCCGAGCATTCTGACAATCCATGGGGGGTGACACCTTTCAAGAAGGTTGTGAGCTTGCCTTCAAGAATTGATACTCAGCAAACATCAGCTGTGGTGACCTTGCATGGACAATTGTTTGTTCGAGTTCCATTTGAGAGCAATCAGAATAGAGAAGGCTGA 1686 0.43 MSDAKENEEAAQNLPLAVEETQQLVEAQVQPEDLAAPVSIGDASNDVENGKAEVKAPVEDKNVKPEANSESIPQQDVVNSENTLHSVPVVDNVQVLNETEGGYAADVKSKVEEVPRCDKGTENDVCQIKADTAETTVVVNSPKAFEVADGKTCDNGDSNSICPSHSEPSTPHAVPADIRAEIKSGFDNENTDSEKLAVVAHADNGNSISKNLYFLDPDDSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYKEELNCLKLWRSVNKLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRVFYEKALLDYERHTTNGGELNVPITPHSEPIHIENQVVFNLGFASGAMCVISSSSSTTGIAILICVSESLLPVQSVQGSASGRARRDAAARAMQGWHSQRLLGNGEYSDPIIKDRNSLSTQKREKQLKNINLLKRKKSSDTVNAVKVAHSKPSRPQLRHMLPYFSFHHECCKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHSDNPWGVTPFKKVVSLPSRIDTQQTSAVVTLHGQLFVRVPFESNQNREG 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1320 561 SUPERFAMILY HSP20-like chaperones 476 553 IPR008978 -
Aed7g1320 561 Pfam Hsp20/alpha crystallin family 477 557 IPR002068 -
Aed7g1320 561 CDD ACD_sHsps_p23-like 477 552 - -
Aed7g1320 561 Pfam ARID/BRIGHT DNA binding domain 232 316 IPR001606 GO:0003677
Aed7g1320 561 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 13 351 - -
Aed7g1320 561 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 379 555 IPR045147 GO:0006357
Aed7g1320 561 Coils Coil 556 561 - -
Aed7g1320 561 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 460 561 IPR002068 -
Aed7g1320 561 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 379 555 - -
Aed7g1320 561 SUPERFAMILY ARID-like 224 333 IPR036431 GO:0003677
Aed7g1320 561 SMART bright_3 230 321 IPR001606 GO:0003677
Aed7g1320 561 Gene3D - 461 560 IPR008978 -
Aed7g1320 561 SMART ARID_2 226 316 - -
Aed7g1320 561 Gene3D - 229 327 IPR036431 GO:0003677
Aed7g1320 561 MobiDBLite consensus disorder prediction 33 73 - -
Aed7g1320 561 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 13 351 IPR045147 GO:0006357
Aed7g1320 561 ProSiteProfiles ARID domain profile. 229 320 IPR001606 GO:0003677
Aed7g1320 561 MobiDBLite consensus disorder prediction 48 66 - -
Aed7g1320 561 CDD ARID 231 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1320 Aed-Chr7 10941696 10950659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1320 213 554 ARID Transcription Factor Family AT1G76510 52.754 1.17e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aed7g1320 HSP20 1.2e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1320 - - gmx:100803374 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1320 7 10941696 10950659 Aed7g1320 7 10941696 10950659 ECH
Aed11g1099 11 16597583 16603401 Aed7g1320 7 10941696 10950659 PCT