Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1299 ATGAGAAAAGTTCTGCTTCTACTCTTTGTGATGTTCTACCATGGCTTTCCTTCAAAAGGAATCACCAGTGTTTTTACAACAAGACCAAGTACCGTTAACATAGGGGCACTTATGTCCTTCAATTCAACCGTTGGCAGAGTAGCTAAAGTTGCCATAGAAGCTGCAGTGGATGATATAAACTCCAATGCAACGATTCTCAATGGAACTAAGCTTAATATTACAATGCTAGACACCAAACTATTGATAGAGAGTGACACTGTGGCCATAATTGGTCCCCAGTACTCAGTCATGGCACATGTGATATCACACATAGCAAATGAGATGCAAGTGCCTCTACTTTCATTTTCAGCAACAGACCCTACACTCACTTCACTTCAGTTCCCATATTTTGTTAGGACAACACAGAGTGATCTCTATCAGATGGCTGCTGTGGCAGAAATTGTAGACCACTTTCAATGGAGAGATGTCATAGCAATTTACATTGATGATGATCATGGAAGAAACGGGGTGACTGCCTTAGGTGACAAGCTAGACAAGAAACGCGGTAAAATATCACATAAATCACCACTTAGGCCTAATAACATTACCAAGGAAGAGATAAACAATGCATTAGTTAAGATAGCTTTAATGGAATCAAGGGTAGTGATCCTTCACATATACCCTTCTTTTGGTCTAGAAGTACTTCATGTGGCTAGGTCACTTGGTATGATGGGAAGTGGCTATGTGTGGATAGTTACAGATTGGCTTTCTACATTGCTGGATTCAAATCCATCATTGTTCACAAGTCAAGCCATGAAAGACATCCAAGGTGTTATCACCTTGAGAATGTACACACCCAAATCAGAAATCAAAAGGAAGTTTTGTTCTAGGTGGAACAAACTGAGCCAAGTAAAGGATCCTGAAGAGGGTCCTTTTGCATTGAACACCTTTGGCCTTTATGCCTATGATACGGTTTGGATGCTTGCTTTTGCACTCGATGCATTTTTTAAGAGTGGAGGAACTTTATCATTTTCAAATGATTCTAGTCTAAACATGTTAAGAGGGAGCACCCTTAACCTTGATACTATGGGGGTCTTTGTTGATGGTAACATGCTGCTTCAGAAAATTTTAGAAGTGAACATAACTGGCTTAACAGGTCAAATGATGTTTGGTCCAGATGGGAACTTGGTGGATCCATCATATGAAGTGATTAATGTGATAGGCACTGGGATTAGAAGGATTGGCTATTGGTCTGAAATCTCTGGTCTTCATACTGGGGAAGCTCCTAATCATTCAAATTCTAGTGAAGGACTGTATGGTGTCATTTGGCCTGGTCAAACAACTCAAACCCCACGTGGTTGGGTTTTTGCTAGCAATGGAAGACACTTGAGAATTGGAGTGCCGCTTAGAATCAGTTACCGTGAGTTTGTGTCAAGAACTGAGGGGTCTGAGATGTTTGGTGGTTATTGCATAGATGTGTTCACTGCTGCACTCAACTTGTTGCCTTATCCTGTTCCCTATAAGTTTGTTCCATTTGGAGATGGTAAAAACAACCCATTAAATACAAAACTTCTCAACAAGATCACAGCTGGGGAGCTCAATGCTGTTGTGGGGGACATTACAATAACCAAAAACCGAACTAAGATAGTGGATTTTACACAGCCATATATTGAGTCTGGTCTAGTTGTTGTGGCACCTATTAGGAAGATGAAATCTAGTGCTTGGGCTTTCCTGAGGCCATTCACTCCAATGATGTGGTTTGTGACAGGAATCTACATTGCAAGCCTCACCTCCATCCTAACCGTGGAACAGCTCTCTTCCTCGGTTAAGGGAATCGAAAGCTTGACAACAAGCAACGAGCGCATCGGTTTCCTGAGTGGCTCCTTTGTTGAAAGCTATCTGAAAGAGGAACTCAACATTCACAGATCAAGGCTTGTTCCTCTCAACTCGCCATCAGAATATGAAAAGGCATTGAAGGATGGTCCTGTTAATGGAGGTGTCACTGCAATAATAGATGAACGTGCATACATGGAGCTGTTCCTTGCAACCAGATGTGAATATGGCATTGTTGGCCAAGACTTTACTAAGATGGGGTGGGGCTTTGTAAGTGCATTCATCCCTTTTCTCTCTTCTAAATATGAAATTCAGCTTCAGATATACCTCATGCATTTTTCTCCAAACCATTAA 2166 0.4141 MRKVLLLLFVMFYHGFPSKGITSVFTTRPSTVNIGALMSFNSTVGRVAKVAIEAAVDDINSNATILNGTKLNITMLDTKLLIESDTVAIIGPQYSVMAHVISHIANEMQVPLLSFSATDPTLTSLQFPYFVRTTQSDLYQMAAVAEIVDHFQWRDVIAIYIDDDHGRNGVTALGDKLDKKRGKISHKSPLRPNNITKEEINNALVKIALMESRVVILHIYPSFGLEVLHVARSLGMMGSGYVWIVTDWLSTLLDSNPSLFTSQAMKDIQGVITLRMYTPKSEIKRKFCSRWNKLSQVKDPEEGPFALNTFGLYAYDTVWMLAFALDAFFKSGGTLSFSNDSSLNMLRGSTLNLDTMGVFVDGNMLLQKILEVNITGLTGQMMFGPDGNLVDPSYEVINVIGTGIRRIGYWSEISGLHTGEAPNHSNSSEGLYGVIWPGQTTQTPRGWVFASNGRHLRIGVPLRISYREFVSRTEGSEMFGGYCIDVFTAALNLLPYPVPYKFVPFGDGKNNPLNTKLLNKITAGELNAVVGDITITKNRTKIVDFTQPYIESGLVVVAPIRKMKSSAWAFLRPFTPMMWFVTGIYIASLTSILTVEQLSSSVKGIESLTTSNERIGFLSGSFVESYLKEELNIHRSRLVPLNSPSEYEKALKDGPVNGGVTAIIDERAYMELFLATRCEYGIVGQDFTKMGWGFVSAFIPFLSSKYEIQLQIYLMHFSPNH 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1299 721 CDD PBP1_GABAb_receptor_plant 33 416 IPR044440 -
Aed7g1299 721 Pfam Receptor family ligand binding region 50 401 IPR001828 -
Aed7g1299 721 PANTHER GLUTAMATE RECEPTOR 585 696 - -
Aed7g1299 721 PANTHER GLUTAMATE RECEPTOR 11 585 - -
Aed7g1299 721 Pfam Bacterial extracellular solute-binding proteins, family 3 479 660 IPR001638 -
Aed7g1299 721 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 585 696 - -
Aed7g1299 721 SUPERFAMILY Periplasmic binding protein-like II 432 695 - -
Aed7g1299 721 SMART GluR_14 457 719 IPR001320 GO:0015276|GO:0016020
Aed7g1299 721 Gene3D - 589 689 - -
Aed7g1299 721 Gene3D - 50 391 - -
Aed7g1299 721 Gene3D - 136 416 - -
Aed7g1299 721 Gene3D - 450 572 - -
Aed7g1299 721 SUPERFAMILY Periplasmic binding protein-like I 28 447 IPR028082 -
Aed7g1299 721 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1299 Aed-Chr7 10688814 10692818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1299 8 694 Ion Channels AT1G42540 49.679 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1299 K05387 - gmx:100790502 1065.06