Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1292 ATGCCGAAAGTCAAAGCCGACTCCAAAGCCTCCGATAATCGGTTGAAGCGCAAGGGCGCCGGTGCCGGGAGGAAGCAATCAAAGAAAGCTGCTAAGGATCCTAACAGGCCGAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAGATTTTCAAGAAGGATCATCCTAACAACAAATCCGTCGCTGTTGAAAAAGCCCCCTTCGTTGCTCTTGCTGAGAAGAAGAAAGAAGAGTATGAGAAGACTATTTTGGCCTATAATAAGAAATTGGAGGGAAAGAATTCAGAGGAGGACGAGTCGGACAAGTCAAAGTCTGAAATTAATGATGATGATGAAGACGAGGAGGACGATGATGATGAGTGA 375 0.4587 MPKVKADSKASDNRLKRKGAGAGRKQSKKAAKDPNRPKRPPSAFFVFMSEFREIFKKDHPNNKSVAVEKAPFVALAEKKKEEYEKTILAYNKKLEGKNSEEDESDKSKSEINDDDEDEEDDDDE 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1292 124 Pfam HMG (high mobility group) box 37 69 IPR009071 -
Aed7g1292 124 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 67 - -
Aed7g1292 124 Gene3D High mobility group box domain 21 108 IPR036910 -
Aed7g1292 124 MobiDBLite consensus disorder prediction 1 43 - -
Aed7g1292 124 MobiDBLite consensus disorder prediction 89 106 - -
Aed7g1292 124 SMART hmgende2 36 92 IPR009071 -
Aed7g1292 124 SUPERFAMILY HMG-box 28 95 IPR036910 -
Aed7g1292 124 MobiDBLite consensus disorder prediction 89 124 - -
Aed7g1292 124 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 68 122 - -
Aed7g1292 124 MobiDBLite consensus disorder prediction 1 19 - -
Aed7g1292 124 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 91 IPR009071 -
Aed7g1292 124 MobiDBLite consensus disorder prediction 107 124 - -
Aed7g1292 124 Coils Coil 73 100 - -
Aed7g1292 124 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 68 122 IPR031061 -
Aed7g1292 124 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 67 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1292 Aed-Chr7 10626503 10628018 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aed7g1292 HMG_box 5.3e-08 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed7g1292 K25507 - gmx:100305957 162.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1292 7 10626503 10628018 Aed7g1292 7 10626503 10628018 ECH