Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed7g1280 ATGGGAGGTGACAGTGCCGTCGAGGAATCCGAAGTGACCAAGAACGTCAAGATCAACGTTCGCTGCTCCAACGGTTCCAAGTTTTCCGTTCAGATTGCCGTCGATTCCACCGTCAGTTCCTTCAAGGACGCCGTTGCTCGCAACTGCGACATCCCCGTCGAACAGCAACGCCTCATCTACAAGGGTCGCATCTTGAAGGATGATCAAACCCTCCATAGCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTTTGTGGTTCTGCTCCTACCAATCCAACTGGTGGGACCAATACTAGTAGCACAAATACCAATACCACAACAAATAATGCTAGAGGTGCTGGTGTGAATGAAGGTGGAGATATAGGAGGGCTTGGTTTTGGAGGTTCACTATTCCCTGGACTAGGTGCCAATGGGACTGGGGGCAATGGTTTATTTGGCGAGGGATTTCCTGATCTTGAACAGATGCAGCAACCATTTATTTCAAATCCCAATTTAGTGAGAGAAATAATGAATTCGCCTGCCATGCAGAATCTAATAAATAATCCTGATATAGTGCGGAATCTTATAATGAATAATCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTTAATGATCCCAGCACTCTCCGCCAGACCCTCGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACGATGGCTGGTAATACAGGAAATAATAATGCAGCAATTCCTGGGACTCATGGCCATGCAAGGGACCAATCAACTAATCCCTCCACCAATAGTTCTGAAGAAACTGCTGGTTCTCCCTTACCCAATACTAACCCGCTTCCAAATCCATGGTCCCCTACTGGTACTGGAGGTGCTCAAAATAACACCAGGAGGTCGTCAACTACTGGTGTGGATCCCAGGCAGCAAGGACCTACTGGCTTAGGAGGGACTAGTCTTCCAGACCTTGAAAGCTTGCTGAGTGGCATGGCTCATATTTTGCCAGATGCTACTTTCATGACCCAGCTAATGCGAAATCCAGCTATCTCTCAAATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAGATTCTTGGTGCTAATACTCAGCAGCGTGGCATGCCTGATTTAAATTCCCTTAGAGAAGTAATGCAAAATCCAGAATTCCTTCGCTTGTTTTCTTCACCTGAGACAATGCAGCAACTGATGTCTTTCCAGCAAGCTCTTATGTCTCAGTTTGGCCAGCAACAATCAACGCGCAGGGAATCTGGTCAAACTGGCGGAGGCACTGGACCAATGAACAACATGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGTCTAGCTGCTCCAAATAGATCAAATGAGCCACCAGAGCAGTTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGAGCCCTTATTGCTACTTCCGGTAATGTTCATGCAGCGGTTGAACGACTATTGGGGAACTCTGGTCAGTAG 1635 0.4642 MGGDSAVEESEVTKNVKINVRCSNGSKFSVQIAVDSTVSSFKDAVARNCDIPVEQQRLIYKGRILKDDQTLHSYGLEADHTVHLVCGSAPTNPTGGTNTSSTNTNTTTNNARGAGVNEGGDIGGLGFGGSLFPGLGANGTGGNGLFGEGFPDLEQMQQPFISNPNLVREIMNSPAMQNLINNPDIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAIPGTHGHARDQSTNPSTNSSEETAGSPLPNTNPLPNPWSPTGTGGAQNNTRRSSTTGVDPRQQGPTGLGGTSLPDLESLLSGMAHILPDATFMTQLMRNPAISQMMQSMLSNPQTLNQILGANTQQRGMPDLNSLREVMQNPEFLRLFSSPETMQQLMSFQQALMSQFGQQQSTRRESGQTGGGTGPMNNMGLEMLSSMFGGLGAGSLAAPNRSNEPPEQLYASQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed7g1280 544 CDD UBA_PLICs 502 540 - -
Aed7g1280 544 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 496 541 IPR015940 -
Aed7g1280 544 SUPERFAMILY UBA-like 498 540 IPR009060 GO:0005515
Aed7g1280 544 MobiDBLite consensus disorder prediction 90 113 - -
Aed7g1280 544 Pfam Ubiquitin family 18 86 IPR000626 GO:0005515
Aed7g1280 544 Pfam UBA/TS-N domain 502 538 IPR015940 -
Aed7g1280 544 Gene3D - 4 100 - -
Aed7g1280 544 ProSiteProfiles Ubiquitin domain profile. 16 85 IPR000626 GO:0005515
Aed7g1280 544 MobiDBLite consensus disorder prediction 268 309 - -
Aed7g1280 544 CDD Ubl_Dsk2p_like 16 88 - -
Aed7g1280 544 SMART uba_6 502 540 IPR015940 -
Aed7g1280 544 MobiDBLite consensus disorder prediction 317 349 - -
Aed7g1280 544 PANTHER UBIQUILIN 9 544 - -
Aed7g1280 544 Gene3D - 188 246 - -
Aed7g1280 544 MobiDBLite consensus disorder prediction 268 353 - -
Aed7g1280 544 SMART CBM 139 180 IPR006636 -
Aed7g1280 544 SMART CBM 193 232 IPR006636 -
Aed7g1280 544 SMART CBM 344 399 IPR006636 -
Aed7g1280 544 SMART CBM 401 437 IPR006636 -
Aed7g1280 544 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 9 544 - -
Aed7g1280 544 SUPERFAMILY Ubiquitin-like 12 104 IPR029071 -
Aed7g1280 544 SMART ubq_7 16 87 IPR000626 GO:0005515
Aed7g1280 544 Gene3D - 484 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed7g1280 Aed-Chr7 10485391 10493999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed7g1280 16 85 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 2.14e-07 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1280 7 10485391 10493999 Aed7g1280 7 10485391 10493999 ECH
Aed11g1137 11 16871223 16877285 Aed7g1280 7 10485391 10493999 PCT